Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00122 ATGGAGTTGTTTCCTGCACAACCAGATTTGTCACTACAAATTAGCCCTCCAAATACTAATAAACCCTCTTCATCTTGGAGATCAAGAACAAGTAGCTCTTCTTCTTCACAAGAAGATGTTGATTTGGAGTTTTGGAATAATAAATCCACTCCTAAACATCATATTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTTTCAAATTTAACTCAAATTAACCATCATCAATACCCTAATGTTTCTCCTTCTCCAACTCCTAATCATCATCATCTTCTTCATCATCATCATCATCGTTATCCCGTTCTTGATTCCCCCGCTCACCTTTTTGAAACCCTAAACAAAACCCACAACCGACCTTCGGCCATTTTCCACCACAATACGCCGCCCCCGTCGTCGTCACTTGACCCGACACCGCCCTCGTTTACAGGGCAAATAAATGGTCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACGAATAATCCCTCCGTCGGTACAGGAAACGGCGGCGTTGTCACTCCCTCCGCTGCTACCCATGGCCAGATTATGATGCGGTCGAGATTTTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCACCACGGATGAGATGGACTTCTACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTCAAAGATCTAACCTTAGCTCATGTGAAATCTCATTTACAGATGTACCGTACAGTGAAGACTACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAACCATTGCAAGACAAAATGAGAACTCAATTCAACAAACCTCAAGGCAAAACCCTCACCAAGACAAGGATTATCATGCCCTATGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAATGATTCTTCTAGGGACCTTTCTTCATCACTCGAGAATGATATGGATCCAAAGAGTTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACAGATATTATTTGTGGTGTGACAAATAATAATCCTCGGAAGCCTAATTTAGAATTCACGTTAGGAAGGCCAATTTGA 1194 42.55 MELFPAQPDLSLQISPPNTNKPSSSWRSRTSSSSSSQEDVDLEFWNNKSTPKHHIHHLHPHSCFDLSLSNLTQINHHQYPNVSPSPTPNHHHLLHHHHHRYPVLDSPAHLFETLNKTHNRPSAIFHHNTPPPSSSLDPTPPSFTGQINGQDLGFLRPIRGIPVYHQTNNPSVGTGNGGVVTPSAATHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPTIARQNENSIQQTSRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKSSNNERLSEISSSTDIICGVTNNNPRKPNLEFTLGRPI* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1103395 1107501 + Chy4G068400.1 Chy04g00122 224021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00122 397 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 395 IPR044847 GO:0000976|GO:0006355|GO:0010158
Chy04g00122 397 SUPERFAMILY Homeodomain-like 206 262 IPR009057 -
Chy04g00122 397 Gene3D - 208 265 - -
Chy04g00122 397 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 395 - -
Chy04g00122 397 MobiDBLite consensus disorder prediction 339 369 - -
Chy04g00122 397 MobiDBLite consensus disorder prediction 1 39 - -
Chy04g00122 397 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Chy04g00122 397 MobiDBLite consensus disorder prediction 11 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00122 - - - csv:101219785 749.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01499 Chy-Chr3:17359749 Chy04g00122 Chy-Chr4:1103395 3.19E-39 dispersed
Chy04g00122 Chy-Chr4:1103395 Chy04g00565 Chy-Chr4:5954219 4.08E-33 dispersed
Chy06g01030 Chy-Chr6:8136068 Chy04g00122 Chy-Chr4:1103395 6.73E-53 transposed
Chy08g00618 Chy-Chr8:14014034 Chy04g00122 Chy-Chr4:1103395 1.22E-23 transposed
Chy09g00468 Chy-Chr9:4263051 Chy04g00122 Chy-Chr4:1103395 1.02E-31 transposed
Chy12g01377 Chy-Chr12:17968047 Chy04g00122 Chy-Chr4:1103395 7.45E-37 transposed
Chy04g00122 Chy-Chr4:1103395 Chy06g02168 Chy-Chr6:25965533 2.45E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy06g01030 . 10 282 G2-like Transcription Factor Family AT5G16560 51.8 7.3e-48 188.3
Chy04g00122 . 191 396 G2-like Transcription Factor Family AT5G16560 51.7 9.5e-40 161.4
Chy04g00565 CCT 1 160 G2-like Transcription Factor Family AT5G42630 60.0 2.5e-37 152.5
Chy10g01118 . 19 258 G2-like Transcription Factor Family AT1G25550 52.7 2.0e-49 193.0
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT5G05090 56.5 3.0e-74 275.4
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT5G05090 55.4 1.1e-71 266.9
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT4G13640 57.2 5.7e-66 248.1
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy04g01368 . 33 265 G2-like Transcription Factor Family AT1G69580 50.4 6.1e-40 161.8
Chy01g00844 . 5 373 G2-like Transcription Factor Family AT1G79430 53.9 3.6e-83 305.4
Chy11g01047 . 1 365 G2-like Transcription Factor Family AT1G79430 51.4 1.3e-75 280.4
Chy06g00365 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 6.9e-42 168.3
Chy04g01368 . 72 266 G2-like Transcription Factor Family AT5G18240 52.5 4.9e-39 158.7
Chy02g00491 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 1.4e-51 199.9
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 1.3e-90 330.1
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT3G10760 58.5 9.9e-83 303.9
Chy08g00237 . 1 203 G2-like Transcription Factor Family AT2G40970 60.7 6.0e-61 231.1
Chy04g01682 . 1 199 G2-like Transcription Factor Family AT2G40970 59.5 8.2e-58 220.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17792 None None None None Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00122 Chy_Chr04 FPKM 2.951426 3.46669 1.155171 0.690425 4.350842 3.223268 3.146953 1.866828 1.108193 1.347377