Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00122 ATGGAGTTGTTTCCTGCACAACCAGATTTGTCACTACAAATTAGCCCTCCAAATACTAATAAACCCTCTTCATCTTGGAGATCAAGAACAAGTAGCTCTTCTTCTTCACAAGAAGATGTTGATTTGGAGTTTTGGAATAATAAATCCACTCCTAAACATCATATTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTTTCAAATTTAACTCAAATTAACCATCATCAATACCCTAATGTTTCTCCTTCTCCAACTCCTAATCATCATCATCTTCTTCATCATCATCATCATCGTTATCCCGTTCTTGATTCCCCCGCTCACCTTTTTGAAACCCTAAACAAAACCCACAACCGACCTTCGGCCATTTTCCACCACAATACGCCGCCCCCGTCGTCGTCACTTGACCCGACACCGCCCTCGTTTACAGGGCAAATAAATGGTCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACGAATAATCCCTCCGTCGGTACAGGAAACGGCGGCGTTGTCACTCCCTCCGCTGCTACCCATGGCCAGATTATGATGCGGTCGAGATTTTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCACCACGGATGAGATGGACTTCTACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTCAAAGATCTAACCTTAGCTCATGTGAAATCTCATTTACAGATGTACCGTACAGTGAAGACTACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAACCATTGCAAGACAAAATGAGAACTCAATTCAACAAACCTCAAGGCAAAACCCTCACCAAGACAAGGATTATCATGCCCTATGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAATGATTCTTCTAGGGACCTTTCTTCATCACTCGAGAATGATATGGATCCAAAGAGTTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACAGATATTATTTGTGGTGTGACAAATAATAATCCTCGGAAGCCTAATTTAGAATTCACGTTAGGAAGGCCAATTTGA 1194 42.55 MELFPAQPDLSLQISPPNTNKPSSSWRSRTSSSSSSQEDVDLEFWNNKSTPKHHIHHLHPHSCFDLSLSNLTQINHHQYPNVSPSPTPNHHHLLHHHHHRYPVLDSPAHLFETLNKTHNRPSAIFHHNTPPPSSSLDPTPPSFTGQINGQDLGFLRPIRGIPVYHQTNNPSVGTGNGGVVTPSAATHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPTIARQNENSIQQTSRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKSSNNERLSEISSSTDIICGVTNNNPRKPNLEFTLGRPI* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1103395 1107501 + Chy4G068400.1 Chy04g00122 224021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00122 397 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 395 IPR044847 GO:0000976|GO:0006355|GO:0010158
Chy04g00122 397 SUPERFAMILY Homeodomain-like 206 262 IPR009057 -
Chy04g00122 397 Gene3D - 208 265 - -
Chy04g00122 397 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 395 - -
Chy04g00122 397 MobiDBLite consensus disorder prediction 339 369 - -
Chy04g00122 397 MobiDBLite consensus disorder prediction 1 39 - -
Chy04g00122 397 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Chy04g00122 397 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01499 Chy-Chr3:17359749 Chy04g00122 Chy-Chr4:1103395 3.19E-39 dispersed
Chy04g00122 Chy-Chr4:1103395 Chy04g00565 Chy-Chr4:5954219 4.08E-33 dispersed
Chy06g01030 Chy-Chr6:8136068 Chy04g00122 Chy-Chr4:1103395 6.73E-53 transposed
Chy08g00618 Chy-Chr8:14014034 Chy04g00122 Chy-Chr4:1103395 1.22E-23 transposed
Chy09g00468 Chy-Chr9:4263051 Chy04g00122 Chy-Chr4:1103395 1.02E-31 transposed
Chy12g01377 Chy-Chr12:17968047 Chy04g00122 Chy-Chr4:1103395 7.45E-37 transposed
Chy04g00122 Chy-Chr4:1103395 Chy06g02168 Chy-Chr6:25965533 2.45E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17792 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00122 - - csv:101219785 749.969