Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00130 ATGGGTGGCAGTGAGATGAATAAACCCGCAAAGGAAGAATCCAAAACAGCACCTGCCACTACGCAGGAACAGTCTCCAAATACAAGCACGGGCACTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACAAGCCCCCAAGCACACCCGTATATGTGGGGGGTACAGCCTATTATGCCCGCTTACGGAACCCCTCCACATCCATATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCACCTATGCCTCCTGGATCGTATCCTTACAGTCCTTTTGCTATCGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAAGCAACATGGAAGGGGAAGGTAAACCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACATCTGCTAATGGAGTATATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACGAGTGAAAGAAGTGATGCTGACTCTGAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCACATCCATTGGTGAACCAAACGATGTCCATAATACCTATCCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGTGTACCCCAACAACTTCTGCCATTTCTTCATTGTGTGGGAAGGTTCCTTCAGCACCAGTTGCAGGAGCTGTTGCTGCTGGGTCACGAGACGGCATTCCGTCACAGCCTTGGTTACAGGATGAAAGAGAGCTAAAAAGACAAAGAAGGAAGCAATCAAATAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGCGATGAACTATCTCAACGTGCCGAAGCTTTGAAGGAAGAAAATGCTAGTCTAAGATCTGAAGTGGATAGGATTAGGACTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCACTCAAGAGGAGGCTTGGCGAAAGTGATGGAAATGAAGATCCAAGATCTACCAAAGATGGCCAAAATTTGAAAAAAGGTCATCATACATCCCGGACCCAACTTGCTAAGGGGTAA 1203 44.56 MGGSEMNKPAKEESKTAPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHPYMWGVQPIMPAYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPSNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSDADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVTGPATNLNIGMDYWCTPTTSAISSLCGKVPSAPVAGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRTEYEQLLSENASLKRRLGESDGNEDPRSTKDGQNLKKGHHTSRTQLAKG* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1169547 1178651 - Chy4G068480.1 Chy04g00130 224029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00130 400 MobiDBLite consensus disorder prediction 113 223 - -
Chy04g00130 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700|GO:0006355
Chy04g00130 400 MobiDBLite consensus disorder prediction 177 191 - -
Chy04g00130 400 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700|GO:0006355
Chy04g00130 400 Gene3D - 302 358 - -
Chy04g00130 400 Coils Coil 312 367 - -
Chy04g00130 400 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700|GO:0006355
Chy04g00130 400 MobiDBLite consensus disorder prediction 359 400 - -
Chy04g00130 400 MobiDBLite consensus disorder prediction 14 39 - -
Chy04g00130 400 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700|GO:0006355
Chy04g00130 400 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Chy04g00130 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700|GO:0006355
Chy04g00130 400 MobiDBLite consensus disorder prediction 299 327 - -
Chy04g00130 400 MobiDBLite consensus disorder prediction 1 46 - -
Chy04g00130 400 MobiDBLite consensus disorder prediction 365 389 - -
Chy04g00130 400 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 392 IPR044827 GO:0003700|GO:0006355|GO:0043565
Chy04g00130 400 PANTHER BZIP TRANSCRIPTION FACTOR 68 1 392 - -
Chy04g00130 400 SMART brlzneu 299 363 IPR004827 GO:0003700|GO:0006355
Chy04g00130 400 MobiDBLite consensus disorder prediction 145 176 - -
Chy04g00130 400 Pfam Disordered region downstream of MFMR 134 266 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g00130 Chy06g02175 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00666 Chy-Chr2:4041247 Chy04g00130 Chy-Chr4:1169547 4.28E-64 dispersed
Chy04g00130 Chy-Chr4:1169547 Chy10g01085 Chy-Chr10:15951534 5.16E-11 dispersed
Chy04g01946 Chy-Chr4:25356021 Chy04g00130 Chy-Chr4:1169547 2.54E-08 transposed
Chy06g00123 Chy-Chr6:815385 Chy04g00130 Chy-Chr4:1169547 2.48E-45 transposed
Chy04g00130 Chy-Chr4:1169547 Chy06g02175 Chy-Chr6:26032096 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17794 PF16596 MFMR_assoc 9.40E-46 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00130 K09060 - csv:101214217 782.326