Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00133 ATGATGGGGACATCAGTCCTTAACTATAATCATCATTTATTGCCCTCAAAAGATCTACCACAGAGTTCATCAGAGTTGAATTTGAAGCAGAAGGAGCAAGAATATTTGTGTCTTGTGAAGAAATGCAAGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTTGGTCTTTTCTTGGATTCTTTTTGCTCAAGCAGTGTTTTGGCTACTTGTGCTCTCTCAGATTGGAACAGCATGGATTATGCTTGCTCCATTTTCCAGCAATTGGATGAACCTACCACATTTGATTTCAACACAATGATTAGAGGGTATGTTAATAACATGAACTTTGAGAATGCTATTTACCTGTATAATGATATGCTTCAAAGAGAAGTTGAACCCGACAACTTCACGTACCCAGTAGTTCTCAAGGCTTGTGCACGGTTAGCAGCGATCCAGGAAGGAATGCAGATTCATGGCCATGTATTCAAGCTAGGTCTGGAAGATGATGTATATGTACAAAATAGCTTAATCAACATGTATGGGAAGTGTCGGGATATCGAAATGTCTTGTGCTATTTTTCGACGTATGGAGCAAAAGAGTGTGGCTTCTTGGAGTGCTATAATTGCAGCTCATGCTAGTCTTGCGATGTGGTGGGAATGTTTGGCGTTGTTTGAGGATATGAGTAGAGAAGGATGTTGGAGAGCTGAGGAAAGCATATTAGTCAATGTGCTATCTGCTTGTACCCATTTGGGTGCTTTTCATTTAGGAAGATGTGCTCATGGTTCTCTATTGAAGAATATTACTGAACTAAATGTTGCCGTTATGACTTCCTTAATGGATATGTATGTGAAATGTGGGTCTCTACAAAAAGGATTATGTCTCTTCCAAAACATGACCAGAAAGAATCAACTATCCTATAGTGTTATAATCTCAGGACTTGGCTTACATGGATATGGTAGACAAGCTCTACAAATCTTCTCAGAAATGGTTGAAGAAGGCTTAGAGCCCGATGATGTTACCTATGTTAGTGTTCTTAGTGCTTGTAGTCACTCTGGCCTTGTTGACGAGGGTCTTGATCTTTTCGATAAGATGAAGTTTGAGTATCGGATTGAACCAACAATGCAGCATTATGGTTGCATGGTAGACCTAAAGGGACGAGCAGGTTTGCTTGAAGAAGCATTTGAGCTTGTCCAAAGTATGCCTATAAAAGCAAACGATGTTGTTTGGCGGAGCCTTCTAAGTGCTTGTAAGATTCACGACAACTTAAAACTTGGCGAGATAGCTGCGGAGAATCTATTCCAATTGTCTTCACACAATCCTAGCGATTACCTAGTTTTGTCTAATATGTATGCAAGAGCTCAACAATGGGAGAATGCAGCTAAGATCAGGACAAAAATGATCAACGGCGGTTTGATCCAAACACCAGGGTATAGCTTGGTGGAGGTCAAAAGCAAGGTATACAAATTCGTTTCACAGGATAAATCATACTGCAAACCGGGCAACATCTATAAGATGATTCATCAGATGGAATGGCAACTGAGATTTGAAGGCTATATGCCAGATACATCACAAGTTATGCTTGATGTAGATGAGGAAGAAAAGAGGGAGAGATTGAAAGGTCATAGCCAGAAGTTGGCTATAGCTTTTGCTCTCATTCATACATCACAAGGATCTGCAATAAGGATAATTAGAAACCTGAGAATGTGTAATGACTGTCATTCATATACTAAACTGGTTTCAATGATCTATGAAAGAGAAATTACTGTAAGAGACCGGAATCGGTTCCACCATTTTAAAGATGGAAATTGCTCTTGTAGGGATTATTGGTGA 1821 39.48 MMGTSVLNYNHHLLPSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAAIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFELVQSMPIKANDVVWRSLLSACKIHDNLKLGEIAAENLFQLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINGGLIQTPGYSLVEVKSKVYKFVSQDKSYCKPGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKRERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1201243 1203063 - Chy4G068510.1 Chy04g00133 224032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00133 606 Gene3D Tetratricopeptide repeat domain 268 509 IPR011990 GO:0005515
Chy04g00133 606 Gene3D Tetratricopeptide repeat domain 33 144 IPR011990 GO:0005515
Chy04g00133 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Chy04g00133 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 581 - -
Chy04g00133 606 Pfam PPR repeat family 95 144 IPR002885 -
Chy04g00133 606 Pfam PPR repeat family 299 346 IPR002885 -
Chy04g00133 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Chy04g00133 606 Gene3D Tetratricopeptide repeat domain 145 265 IPR011990 GO:0005515
Chy04g00133 606 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 581 - -
Chy04g00133 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Chy04g00133 606 Pfam E motif 416 478 IPR046848 -
Chy04g00133 606 Pfam DYW family of nucleic acid deaminases 514 606 IPR032867 GO:0008270
Chy04g00133 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 364 IPR002885 -
Chy04g00133 606 Pfam PPR repeat 374 397 IPR002885 -
Chy04g00133 606 Pfam PPR repeat 200 229 IPR002885 -
Chy04g00133 606 Pfam PPR repeat 171 197 IPR002885 -
Chy04g00133 606 TIGRFAM PPR: pentatricopeptide repeat domain 302 334 IPR002885 -
Chy04g00133 606 TIGRFAM PPR: pentatricopeptide repeat domain 336 370 IPR002885 -
Chy04g00133 606 TIGRFAM PPR: pentatricopeptide repeat domain 169 197 IPR002885 -
Chy04g00133 606 TIGRFAM PPR: pentatricopeptide repeat domain 100 131 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00133 - - - csv:101215176 1207.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02488 Chy-Chr2:28407265 Chy04g00133 Chy-Chr4:1201243 7.07E-119 dispersed
Chy04g00133 Chy-Chr4:1201243 Chy03g01128 Chy-Chr3:14548045 1.06E-168 dispersed
Chy04g00133 Chy-Chr4:1201243 Chy06g01465 Chy-Chr6:15882053 2.61E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00133 Chy_Chr04 FPKM 11.593108 13.24152 14.773767 15.121001 22.026497 22.427887 21.745392 30.604309 26.630337 26.776836