Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00142 ATGGCTTCTCTCCAGTCTATTCTCCGGCCCATTCCTCTGGCAGAAAACTGCCCGGCAGTGTTCCCTTACCGTTCTCACAGCTCAATACTTTTTACTCGATTTCACTCTCACTATGTACACAATTTGCGCAATACCCGACGGTTGTATTTCCGAGATTTCAGAATTATGGCTTCGATTGCAGATACTGTTGGTCATACTTCTGATGCTCCGGTGCTTACTAGTTCAGAGGTTATTGAAAGGTTAAGGGCAAGAAGAGAAAATCAAGAAAACCAGCAACAATACCTTGCCATGTATTCCAGCGTTTTTGGAGGAATTACGACAGACCCAGCTGCTATGGTGATTCCAATTGATGATCACATGGTCCACCGGGGACATGGTGTTTTTGATACTGCTACCATAGTGGATGGATATCTGTATGAGTTGGACCAGCACCTTGACCGCATTTTGAAATCAGCATCGTTGGCAAAAATTAACCTCCCAATTCCATATGATCGGGAGATGATTAGAAGGATACTCATAAGAACTGTGAGTGCTTCTAAGTGTAGAAATGGATCACTTCGATACTGGCTCTCTGCAGGACCTGGAGATTTTCAACTTTCTTCTTCTGGCTGTCATCTGTCAGCCCTTTATGCAGTTGTAATTCAAGGGAAGCCGCCATCTCGTCCAAAAGGCATCAAAGTTATAACTTCATCAGTCCCGATGAAACCACCCCAATTTGCAATTATGAAGAGTGTAAATTACCTACCAAATGTTCTTTCAAAGATGGAAGCAGAAGAAAAAGGTGCTTATGCATCCATTTGGTTGGATAGTGATGGATTCATTGCTGAAGGGCCTAATATGAACGTGGCTTTTATTACTAGCGATAAGGAATTCATAATGCCTCACTTCGACAAAATTCTAAGCGGGTGCACAGCTAAGAGAATTATAAATCTTGCTGAGAGGCTGGTGAAAGAGGGTAAGCTTCGGAGCATAAGCTGTGAAAATATAACCATGGAGGAAGGGAAGAAGGCGGATGAAATGATGCTTATTGGGAGTGGAGTTCTTGTTTCTCCCGTACTGCAGTGGGATGAGCAAATCATTGGTGATGGAAAAGAAGGTCCGTTGGTTCAGGCACTTTTCGATCTTCTCATCGAGGACATGAACTCCGGCCCCCCAACAGTCCGAATACCGACGGCGTTCTCTGAATCAGCAGAGGAAGAAGAAAAATCTCGCGTCACCTTCCAACTCCAAAGCTTACAATCTCAAAACAAGAATTTCTTTGCTAAGCTTCAGATACGACTGAAGAACGTTAAGGGAATAATCGGAATAAGATTTATTGCTTTTGCGGTAGTCGTGGTCGTGGAGATGGTGAATCCGATAGTTGAACGTGCCACGAGCGATATGCTGATTGGTCCTGACTGGGCTGCGAACATGGAGATATGTGATATGATCAACAGAGATTATGGGCAAACAAAAGATGTTGTTAAGGGAATAAAGAAGCGCCTTGGAAGTAAGCACCCCAAAGTTCAGCTTCTTGCTCTAACACTCTTGGAGACCATCTTCAAGAATTGTGGAAACATCAGTCATGCACATATGGCGGAGAAGGAAATTCCCCATGATATGGTCAAAATTGTAAAGAAGAAGCCTGACCTTCGTGTCCAAGAAAAGATATTGCTCCTGATAGATACCTGGCAAGAGGCTTTAGGAGGATCAACAGGACGATATCCACAATACTATGCTGCTTATCAAGAACTATTGCGTGCTGGGGCACTTTTTCCCCATAAATCTGAAATACCAGCGCCTGGATTCACACCTCTTCAAAAACAACAGGTGGGATTGGATAATCAGAATCTCCACAATCCTGATTATCAGCAAGATGCTCCAGGATCCTCAAGGGATGTTAAATTTTCAGCCTTAAGCTTGAGTGAGATCCAACTTGCACGGGGAGTAGTGGATGTCCTTAAAGAAATGCTAAATGCATTAGATCCGGGAAACAAGGAGGATATTCGGCAGGATGTCGTTGTTGACTTGGTAGAACAATGCCATAATTACAAGCAGAGAGCTGTTCATCTTGTGAATTCAACTTCGGATGAATCATTGCTCTGCCAAGGATTGTCACTTAATGATGAATTACAACGTGTACTTTCCAAGTATGAAGCCATTGCTTCAGGAACCTCTGTTCTGAAAGGGGAACCAAAATCCGAATTGGTTGGAGCACATCATGATGATCATTTTCCTCTTGGTAACACTGGAGATACCAACCAACGACCTGAGAAGAAGTTGGCCTCCAATACTACTGGCTCAAGCACACAAACAGTAAATAAGTCATTGAGTGCATCCCCATCCATTGATGGTACAGCTTCTCCAGCTAAGTTTGATCCCAAATTGGACCTGCTGAGTGGTGACGACTACATTCATCCTGATGCGAACACTTCACTGGCTCTTGTTCCTTTGACCAAGCAGCAGCCAACTACTCCTTTATCTGAACAGAATGCCCTTGTCCCTTTTGACGTGCATTATGATAGCAACCGAGCAACTGATACTCCGTCCAACAATCCTGGAGATCAGAGCCATGGTTCTGTCTCAAACTTCCACCAGCACCAAGTTTTTCAGTCCCCGCAGGGTGAAATGCACCTAAATGGAACTGTCCAACTCCCCATATCGTCTCACCGCGAGCAGTCACTGTACACAAATGCTTCTGGTCCTGGTCCCTCCATGACTAGCCAGGTTTCCCAGGCAGGACAGAGGCAACCCCTCGATTCATATAATGGTTCTCAAAACAACGAGTCATTTCCACCACCACCTTGGGAATCTCACCCTGTGGGTGACAATGGTTTGGTAGCAAGCGATGAGTATCACCATCCAATGACGGTAACTCAGGCCGTTTTCACACATGTACAGAATGGTCTATATCCTCAAGGACTTCAACCAATTGCAAATGACCAAGTTGTAGGTGTGTATATCCAGCCAATTGTAGGCAGCCAGATTTCAGCACTTAATGGCCAGTTTAGTCTCAATAATCAGCTGGATTTGGCTCCTCAAACATTCCACAGAGGGGCTTATGGAGCCATGCTTTCACAGCAAACTGGACAGATGGCAACTTTGTATCCTTTGCAAATGTTTGGCAATCAATTCTATGGCTATGGCCACATCCAACCAAATGGGACACAGTATTTGGAGCAGAGAACGTATATTAGTGATGATAATGGCATAAGAAATTCATCCTACCAAATCTCTGCCCTGTCTAGTATGCCTCCCAATAAGCCTTCTAAGCCGGAGGACAATCTGTTTGGTGATCTTGTTGACTTGGCAAAGTTCAAGTCCATGAAATCTACTCCTGCTGCTGCTGGTGGCGACTGA 3339 44.41 MASLQSILRPIPLAENCPAVFPYRSHSSILFTRFHSHYVHNLRNTRRLYFRDFRIMASIADTVGHTSDAPVLTSSEVIERLRARRENQENQQQYLAMYSSVFGGITTDPAAMVIPIDDHMVHRGHGVFDTATIVDGYLYELDQHLDRILKSASLAKINLPIPYDREMIRRILIRTVSASKCRNGSLRYWLSAGPGDFQLSSSGCHLSALYAVVIQGKPPSRPKGIKVITSSVPMKPPQFAIMKSVNYLPNVLSKMEAEEKGAYASIWLDSDGFIAEGPNMNVAFITSDKEFIMPHFDKILSGCTAKRIINLAERLVKEGKLRSISCENITMEEGKKADEMMLIGSGVLVSPVLQWDEQIIGDGKEGPLVQALFDLLIEDMNSGPPTVRIPTAFSESAEEEEKSRVTFQLQSLQSQNKNFFAKLQIRLKNVKGIIGIRFIAFAVVVVVEMVNPIVERATSDMLIGPDWAANMEICDMINRDYGQTKDVVKGIKKRLGSKHPKVQLLALTLLETIFKNCGNISHAHMAEKEIPHDMVKIVKKKPDLRVQEKILLLIDTWQEALGGSTGRYPQYYAAYQELLRAGALFPHKSEIPAPGFTPLQKQQVGLDNQNLHNPDYQQDAPGSSRDVKFSALSLSEIQLARGVVDVLKEMLNALDPGNKEDIRQDVVVDLVEQCHNYKQRAVHLVNSTSDESLLCQGLSLNDELQRVLSKYEAIASGTSVLKGEPKSELVGAHHDDHFPLGNTGDTNQRPEKKLASNTTGSSTQTVNKSLSASPSIDGTASPAKFDPKLDLLSGDDYIHPDANTSLALVPLTKQQPTTPLSEQNALVPFDVHYDSNRATDTPSNNPGDQSHGSVSNFHQHQVFQSPQGEMHLNGTVQLPISSHREQSLYTNASGPGPSMTSQVSQAGQRQPLDSYNGSQNNESFPPPPWESHPVGDNGLVASDEYHHPMTVTQAVFTHVQNGLYPQGLQPIANDQVVGVYIQPIVGSQISALNGQFSLNNQLDLAPQTFHRGAYGAMLSQQTGQMATLYPLQMFGNQFYGYGHIQPNGTQYLEQRTYISDDNGIRNSSYQISALSSMPPNKPSKPEDNLFGDLVDLAKFKSMKSTPAAAGGD* 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1277971 1288679 + Chy4G068600.1 Chy04g00142 224041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00142 1112 MobiDBLite consensus disorder prediction 730 782 - -
Chy04g00142 1112 CDD GAT_GGA_like_plant 636 714 - -
Chy04g00142 1112 Gene3D - 219 383 IPR043132 -
Chy04g00142 1112 Pfam Amino-transferase class IV 126 354 IPR001544 GO:0003824
Chy04g00142 1112 MobiDBLite consensus disorder prediction 741 778 - -
Chy04g00142 1112 MobiDBLite consensus disorder prediction 887 925 - -
Chy04g00142 1112 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 103 381 IPR036038 GO:0003824
Chy04g00142 1112 Pfam GAT domain 642 716 IPR004152 GO:0035091|GO:0043130
Chy04g00142 1112 SUPERFAMILY GAT-like domain 622 717 - -
Chy04g00142 1112 MobiDBLite consensus disorder prediction 836 854 - -
Chy04g00142 1112 Gene3D - 72 214 IPR043131 -
Chy04g00142 1112 ProSiteProfiles GAT domain profile. 628 716 IPR004152 GO:0035091|GO:0043130
Chy04g00142 1112 ProSiteProfiles VHS domain profile. 457 586 IPR002014 GO:0035091|GO:0043130
Chy04g00142 1112 Gene3D - 448 586 IPR008942 -
Chy04g00142 1112 Gene3D - 630 720 IPR038425 -
Chy04g00142 1112 MobiDBLite consensus disorder prediction 887 942 - -
Chy04g00142 1112 PANTHER TARGET OF MYB PROTEIN 1 449 1102 - -
Chy04g00142 1112 Pfam VHS domain 451 577 IPR002014 GO:0035091|GO:0043130
Chy04g00142 1112 MobiDBLite consensus disorder prediction 834 854 - -
Chy04g00142 1112 Coils Coil 71 91 - -
Chy04g00142 1112 CDD PLPDE_IV 118 376 - -
Chy04g00142 1112 SMART VHS_2 450 582 IPR002014 GO:0035091|GO:0043130
Chy04g00142 1112 SUPERFAMILY ENTH/VHS domain 452 586 IPR008942 -
Chy04g00142 1112 PANTHER TOM1-LIKE PROTEIN 449 1102 IPR044836 GO:0035091|GO:0043130|GO:0043328
Chy04g00142 1112 CDD VHS 450 580 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00142 - - - csv:101216627 1290.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01237 Chy04g00142 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00557 Chy-Chr3:7946180 Chy04g00142 Chy-Chr4:1277971 2.73E-76 dispersed
Chy04g00142 Chy-Chr4:1277971 Chy04g02301 Chy-Chr4:27486177 4.53E-71 dispersed
Chy05g00991 Chy-Chr5:14577812 Chy04g00142 Chy-Chr4:1277971 3.01E-36 transposed
Chy05g01136 Chy-Chr5:15865901 Chy04g00142 Chy-Chr4:1277971 1.52E-20 transposed
Chy07g00050 Chy-Chr7:443093 Chy04g00142 Chy-Chr4:1277971 7.34E-126 transposed
Chy03g01237 Chy-Chr3:15455613 Chy04g00142 Chy-Chr4:1277971 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014022 0 2 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00142 Chy_Chr04 FPKM 5.016591 5.04555 30.316042 28.485655 5.133105 4.309368 4.361514 26.45215 28.241127 28.584627