Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00152 ATGCGAGCTTGGGGCAAATGGGTCTCCGAAATCCGTGAGCCACGCAAGAAATCCCGCATTTGGCTCGGTACTTTCCCTACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCCGCTTTGTCCATTAAAGGTAACTCCGCCATTCTTAACTTCCCTGAACTCGCTCACTCTCTTCCTCGTCCTGTCTCCTTCGCCCCTCGTGACATTCAAGCCGCTGCTGCTAAAGCCGCCCACATGGACTTCAACTTCCATTACTCTTCTACTTCCTCTTCATCTGTTTCCACTTCTTTATCTCCTTCTTCCCCTGACGACGACGACGACGGCCACGAACTCACCGAGATCGTTAAACTCCCCACTCTCGCTTCTTCCAACTACGACGATCACGAATTCGTTCTCATGGACTCCACCGAGGGATGGGTCTATCCACCACCTTGGTTACGAACCATGGAAGATTATTATTACGGCTACCATACCAACAATATCAACGATGAATTGGGAATAATTGGTGATGATCATCATCATACTAAGCTTTGA 534 50.0 MRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDIQAAAAKAAHMDFNFHYSSTSSSSVSTSLSPSSPDDDDDGHELTEIVKLPTLASSNYDDHEFVLMDSTEGWVYPPPWLRTMEDYYYGYHTNNINDELGIIGDDHHHTKL* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1356186 1356825 + Chy4G068700.1 Chy04g00152 224051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00152 177 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Chy04g00152 177 MobiDBLite consensus disorder prediction 88 109 - -
Chy04g00152 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 1 161 - -
Chy04g00152 177 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Chy04g00152 177 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Chy04g00152 177 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Chy04g00152 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 161 - -
Chy04g00152 177 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Chy04g00152 177 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01248 Chy-Chr3:15543641 Chy04g00152 Chy-Chr4:1356186 7.48E-53 dispersed
Chy04g00152 Chy-Chr4:1356186 Chy05g01389 Chy-Chr5:17949100 6.16E-44 dispersed
Chy04g00152 Chy-Chr4:1356186 Chy02g01885 Chy-Chr2:21702613 1.41E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17796 PF00847 AP2 2.50E-10 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00152 K09286 - csv:101217333 333.569