Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g00155 | ATGGAAGGACCCGAATATTTCCAGCCCGGTTTTTCCTCTCAATTTTCTACCGAAGGCCGTCAGTCCTCCGATGTAAATAAAACTATCACCTCCGCCGCACCTCCCACTACTGCCGACCATTTCATCGTCGAGGACCTTTTGAACTTCTCTAATGACGATGACGTTGTCTTCACCGATGGAACTTTCGATAACCAAACCCCTACTTCTACCGATTCTTCCACTCTTACCTTACTCGATTCATGCAATTCTTACCCCAATACCGGCAATGCCCACAACTATCATTTCGCCGACGCTAATTTCTCCACGGACCTTGGTGTTCCGTACGATGACTTGGCCGAGCTGGAATGGCTTTCAAATTTCGTGGAAGATTCTTTCTCCACCGACGATTTGGAGAAGCTGAGTTTGATTTCCGGGATGAATTCCCGGGCCGACGTCCATGACGATGACGCCTCAAAAGCTCGAGAATTTCAGACCGGATTCAACCGGAACCATTCACCAGGTTTTCGCCACGAAATGTCCGTAGTTCCGGCGAAAGCCGCTCGTAGCAAACGGTCTAGGGCGGCGCCTTGCATATGGAATTCCCGATTATCCGTACTCTCTCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTTACGCCACATCCAAACACCGCCAAGAAAACCACGAAGAAGAAAGAAATTCCGGATGACACGTCGTCCGCCGCCGGTAATAACGGGGAAGGACGTAAGTGTCTCCATTGTGCCACCGACAAAACGCCCCAGTGGCGAACGGGACCAATGGGTCCAAAGACGTTGTGTAATGCTTGTGGGGTCCGGTACAAATCCGGTCGTTTGGTACCGGAATACCGACCGGCGGCGAGCCCGACGTTTGTACTGACAAAACACTCAAATTCTCACCGGAAGGTTATGGAACTGCGGCGACAAAAGGAAATGATGAGAGCACAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCAAACGACGACGATTATTTGATCCATCAACACATAGGCCCACTCTATCAATAG | 1056 | 49.91 | MEGPEYFQPGFSSQFSTEGRQSSDVNKTITSAAPPTTADHFIVEDLLNFSNDDDVVFTDGTFDNQTPTSTDSSTLTLLDSCNSYPNTGNAHNYHFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGMNSRADVHDDDASKAREFQTGFNRNHSPGFRHEMSVVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTTKKKEIPDDTSSAAGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ* | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1375627 | 1376773 | - | Chy4G068730.1 | Chy04g00155 | 224054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g00155 | 351 | MobiDBLite | consensus disorder prediction | 218 | 242 | - | - | |
Chy04g00155 | 351 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Chy04g00155 | 351 | CDD | ZnF_GATA | 246 | 293 | IPR000679 | GO:0006355|GO:0043565 | |
Chy04g00155 | 351 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 350 | - | - | |
Chy04g00155 | 351 | ProSitePatterns | GATA-type zinc finger domain. | 247 | 272 | IPR000679 | GO:0006355|GO:0043565 | |
Chy04g00155 | 351 | Gene3D | - | 242 | 326 | IPR013088 | GO:0006355|GO:0008270 | |
Chy04g00155 | 351 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 350 | - | - | |
Chy04g00155 | 351 | PIRSF | Txn_fac_GATA_plant | 25 | 337 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Chy04g00155 | 351 | Pfam | GATA zinc finger | 247 | 280 | IPR000679 | GO:0006355|GO:0043565 | |
Chy04g00155 | 351 | ProSiteProfiles | GATA-type zinc finger domain profile. | 241 | 277 | IPR000679 | GO:0006355|GO:0043565 | |
Chy04g00155 | 351 | MobiDBLite | consensus disorder prediction | 9 | 30 | - | - | |
Chy04g00155 | 351 | SMART | GATA_3 | 241 | 291 | IPR000679 | GO:0006355|GO:0043565 | |
Chy04g00155 | 351 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 242 | 305 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy03g01261 | Chy04g00155 | CCT | |
Chy03g01261 | Chy04g00155 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01261 | Chy-Chr3:15664740 | Chy04g00155 | Chy-Chr4:1375627 | 5.30E-117 | dispersed | |
Chy04g00155 | Chy-Chr4:1375627 | Chy04g00936 | Chy-Chr4:13453297 | 1.25E-94 | dispersed | |
Chy04g00155 | Chy-Chr4:1375627 | Chy01g02263 | Chy-Chr1:27058358 | 3.77E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17797 | PF00320 | GATA | 3.20E-15 | CL0167 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g00155 | - | - | csv:101221905 | 669.463 |