Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00157 ATGATGGCTGTAACCTCTGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTACGTTAGGTACACACCGGAGCAAGTGGAAGCACTTGAGAGACTTTATTATGAATGTCCAAAACCCAGTTCTATGCGCCGCCAACAGCTTATAAGGGAATGCCCAATTCTCTCCAACATCGAACCCAAACAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAAGCATCACGCCTTCAAACTGTGAACAGGAAACTGACAGCTATGAATAGACTCCTAATGGAGGAAAACGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAATCCCAGAATGCGACCTTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTAACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGCGGACTTGTGGGTCTAGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAATGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCGGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTCCAAAACTTTGTAAGAGCAGAAATTCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTCGATCACATGGACTTGGACCCTTGGAGCGTGCCTGAAGTATTGCGGCCATTGTACAAGTCATCTACTCTGATTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGGCAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCACTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAATGAAGCAGTTAATGGGTTTACAGATGAGGGATGGTCTTTGTTAGAAAATGATGGCGTTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCCATGAGCAACGCTGTGCTTTGTGCCAAAGCGTCAATGTTATTACAGAATGTTACTCAAGCAATGCTCATCAGGTTCTTGAGAGAACACCGATCGGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCATCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTTATTCTTCCCTTGGCGCAAACAGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGATGACATGCTTATGCCTGGTGACATTTTCCTCCTCCAACTTTGCAACGGTGTGGACGAAAATACAGTTGGTACTTCGGCTGAACTCATCTTTGCTCCAATTGATGCCTCTTTTTCCGATGATGCACCTATTCTACCATCTGGATTCCGCATCATTCCTCTTGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTCGATCTTGCTTCGGCTCTTGATGTTGGACCTGCAGGGAATAGAGCTTCTGGTGATTGCGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTTGCAGCAATGGCACGGCAATATGTCAGGAGCATTATAGCATCTGTTCAAAGGGTGGCACTGGCTCTTTCCCCTTCAAATTTTGGTCCTCATTCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCACTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAAATGAAGGAAAAGAGTCCGTTCTGAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCCTGGTGGCTCTCCAAGACATCACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCTTCAGAGTTCCCACGGATAATGCAGCAGGGCTTCATTTGTCTTCAAGGGGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTATGAGAAAGCTGTGGCGTGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGTTTCATGTTTATGAATTGGTCTTTTGTTTGA 2529 44.88 MMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQSQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLDPWSVPEVLRPLYKSSTLIAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGVDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTQAMLIRFLREHRSEWADSSIDAYSASAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHSNLQTPAGAPEAQTLARWITQSYRCYMGMELLKNEGKESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFICLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV* 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1390214 1396568 + Chy4G068750.1 Chy04g00157 224056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00157 842 CDD homeodomain 22 82 IPR001356 GO:0003677
Chy04g00157 842 CDD START_ArGLABRA2_like 160 375 - -
Chy04g00157 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 842 IPR044830 GO:0003700
Chy04g00157 842 Gene3D - 200 376 IPR023393 -
Chy04g00157 842 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Chy04g00157 842 Pfam MEKHLA domain 701 841 IPR013978 -
Chy04g00157 842 Gene3D - 14 88 - -
Chy04g00157 842 Pfam START domain 166 374 IPR002913 GO:0008289
Chy04g00157 842 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 842 - -
Chy04g00157 842 Coils Coil 91 118 - -
Chy04g00157 842 CDD bZIP 74 113 - -
Chy04g00157 842 SMART HOX_1 19 85 IPR001356 GO:0003677
Chy04g00157 842 SUPERFAMILY Bet v1-like 165 375 - -
Chy04g00157 842 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Chy04g00157 842 SMART START_1 165 375 IPR002913 GO:0008289
Chy04g00157 842 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Chy04g00157 842 Pfam Homeodomain 22 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02265 Chy-Chr1:27073809 Chy04g00157 Chy-Chr4:1390214 0 dispersed
Chy04g00157 Chy-Chr4:1390214 Chy12g00385 Chy-Chr12:4527977 0 dispersed
Chy04g00157 Chy-Chr4:1390214 Chy02g00094 Chy-Chr2:600150 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17798 PF01852 START 2.80E-53 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00157 K09338 - csv:101218438 1669.44