Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00158 ATGTTTGCTGTCGCCTCTTCTTCGCTTCTGCATTTGAATTTGAGTAATAATAATTTCACCGGCACACTTCCCACCGGCGGTGTCTCTAGGCTCCGAACATTAGACCTATCCAATAACATGATTTCGGGTTCGATTCCGGAAGATTTTGGAGTGTTCTTTGATCGTCTTCAGTTTCTCGATCTGGGTGGGAATGGTTTAATGGGGGAGATTCCGAATTCTGTTGCGAATCTTAGTTCGTTGGAGTTTCTAACGTTGGCGTCTAATAAATTGAGTGGGGATATTCCGCGGGGATTGGGAGGAATGAAGAGATTGAAGTGGATTTATTTGGGTTATAATAATCTTTCAGGGGAAATTCCTGAAGAACTTGGTGGATTGGGTTCTTTGAATCATCTTGATCTTGTGTACAACAAGTTAACAGGGGGAATTCCTGAGTCTCTTGGGAATCTTACTCGACTTCAGTATCTGTTTCTTTATCAAAATGGTCTCACAGGTACAATTCCTCCTTCGATTTTGAGTCTTGTGAATCTGATTTCTCTTGATATTAGTGACAATTCTCTCTCCGGGGAGATTCCAGAGCTTGTAATTCAATTGCAGAATTTGGAGATTCTGCATCTGTTTAGTAATAATTTCACGGGAAAAATTCCAAGAGCTTTGGCTTCTCTGCCTCGACTACAGATTCTTCAGTTATGGTCCAATGGATTTTCCGGCGAAATCCCGGAGTTACTTGGAAGAAACAACAATCTCACCATTCTCGACGTTTCAACTAATTTCCTTACAGGAAAAATCCCAGATGGGCTCTGTGATTCTAAACGTCTTTTTAAGCTCATCCTCTTCTCAAATTCTCTCATCGGCCAAATCCCACGGAGTCTCTGTTCTTGCCAGAGTTTACAACGTGTTCGCCTCCAAAACAACCGTCTCTTCGGCGTTGGCGCGTTATTGATTGGGACAGGAGTGTTGATTACAATACGTCGTCGTAAAGAACCAAAAAGAGTCATAGTAGAAAACAACGACGGAATATGGGAAGTGAAATTCTTCGATTTCAAAGCTGCAAAATTGATGACGGTGGAGGCGATTGTATCCCCGCCATCATCGTCGTCGGAGATTCAATTCGTGGTGGAGAAAGACGAGGAGAAGTGGAGAGTGGAAGGGAGTTTTTGGAGTGAGGTTGAGGAACTGGGGAGGCTTAAGCACTTGAACGTTGTGAGGTTGTTGGGGTCGTGCCGGTCGGAAAAAGCTGGGTATTTGGTTCGTGAGTATGTGGAAGGGGGAGTTTTGAGTGAAATGGTTGGAAGTTTAAGCTGGGAACAACGTCGTAATATCGGTATCGGAATTGCCAGGGCTATGCAGTACTTACATCTCCGGTGTTCTCCGGGAATAATTGCGTCAAATTTGTCGCCGGAGAGGATAATCGTCGATGAGAAATACCAACCACGGCTCGTTATCGGACTGTCCAAGACCACTATTCCTTCACACTATTCCTCCCCCGAAGTTAAGGAATGTCAAGACGTGACAGAGAGGAGCAATGTATACACTTTGGGAGTTATTCTCATCCAATTGCTAACCGGTAAAGGACCACTCCATCGCCAACACCTGGTTGAATGGGCTCGCTACTCCTACTCCAATTCTCATATCGACACGTGGATTGATGGCTCGATCATCGTTACAGACCCGAAACAAATCGTTGGGTTTATGAACTTAGCTCTCAACTTCACCGCAGCTGATCCTATGGCAAGGCCGTCCTCACACCAAGCTTACAAAGCCCTACTCTCTCTTTCTCGGACCACTTGCTCTTCTAAGCTTTGCTCCACTTAG 1812 44.81 MFAVASSSLLHLNLSNNNFTGTLPTGGVSRLRTLDLSNNMISGSIPEDFGVFFDRLQFLDLGGNGLMGEIPNSVANLSSLEFLTLASNKLSGDIPRGLGGMKRLKWIYLGYNNLSGEIPEELGGLGSLNHLDLVYNKLTGGIPESLGNLTRLQYLFLYQNGLTGTIPPSILSLVNLISLDISDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPRALASLPRLQILQLWSNGFSGEIPELLGRNNNLTILDVSTNFLTGKIPDGLCDSKRLFKLILFSNSLIGQIPRSLCSCQSLQRVRLQNNRLFGVGALLIGTGVLITIRRRKEPKRVIVENNDGIWEVKFFDFKAAKLMTVEAIVSPPSSSSEIQFVVEKDEEKWRVEGSFWSEVEELGRLKHLNVVRLLGSCRSEKAGYLVREYVEGGVLSEMVGSLSWEQRRNIGIGIARAMQYLHLRCSPGIIASNLSPERIIVDEKYQPRLVIGLSKTTIPSHYSSPEVKECQDVTERSNVYTLGVILIQLLTGKGPLHRQHLVEWARYSYSNSHIDTWIDGSIIVTDPKQIVGFMNLALNFTAADPMARPSSHQAYKALLSLSRTTCSSKLCST* 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1405648 1409006 - Chy4G068760.1 Chy04g00158 224057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00158 603 Pfam Leucine Rich Repeat 55 77 IPR001611 GO:0005515
Chy04g00158 603 Pfam Leucine Rich Repeat 30 51 IPR001611 GO:0005515
Chy04g00158 603 ProSiteProfiles Leucine-rich repeat profile. 30 52 IPR001611 GO:0005515
Chy04g00158 603 Gene3D Phosphorylase Kinase; domain 1 357 424 - -
Chy04g00158 603 PANTHER - 315 593 - -
Chy04g00158 603 PANTHER - 6 308 - -
Chy04g00158 603 Pfam Leucine rich repeat 79 138 IPR001611 GO:0005515
Chy04g00158 603 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 315 593 - -
Chy04g00158 603 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 308 - -
Chy04g00158 603 Gene3D Ribonuclease Inhibitor 246 308 IPR032675 -
Chy04g00158 603 SUPERFAMILY RNI-like 7 316 - -
Chy04g00158 603 Gene3D Ribonuclease Inhibitor 172 244 IPR032675 -
Chy04g00158 603 Gene3D Transferase(Phosphotransferase) domain 1 425 600 - -
Chy04g00158 603 Pfam Protein kinase domain 372 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00158 603 ProSiteProfiles Protein kinase domain profile. 308 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00158 603 Gene3D Ribonuclease Inhibitor 1 170 IPR032675 -
Chy04g00158 603 SUPERFAMILY Protein kinase-like (PK-like) 378 592 IPR011009 -
Chy04g00158 603 SMART LRR_typ_2 221 245 IPR003591 -
Chy04g00158 603 SMART LRR_typ_2 28 51 IPR003591 -
Chy04g00158 603 SMART LRR_typ_2 149 173 IPR003591 -
Chy04g00158 603 SMART LRR_typ_2 77 101 IPR003591 -
Chy04g00158 603 SMART LRR_typ_2 125 148 IPR003591 -
Chy04g00158 603 SMART LRR_typ_2 197 220 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00158 - - - csv:101218670 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00158 Chy-Chr4:1405648 Chy04g01123 Chy-Chr4:17356339 1.66E-44 dispersed
Chy04g00158 Chy-Chr4:1405648 Chy05g01256 Chy-Chr5:16912310 2.69E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g276 . . . . . . . . . . Cma01g01604 . . . . . . . . . . . . . . . . . . . . . Cone7ag1439 . . . Csa03g04544 Chy04g00158 Cme03g01761 . . . . . . . . . Cmo01g01494 Cmo09g00612 . . Car01g01224 . . Cpe02g00508 . . . . . . . . . . . . . . Lsi08g01069 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006305 1 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 3 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71161 PF00069 Pkinase 4.60E-19 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00158 Chy_Chr04 FPKM 5.781871 6.432411 8.821232 7.882862 8.922237 9.281618 8.764451 8.943266 8.741737 8.58149