Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00165 ATGCGTCAGCTTTTCGAAATCCAATCTCAAATCATTGCTTCCCCAATTCCCTCCATCGATCCCAATATCATTGCTGTCAAGTTCATCGGCGTTTCTTCCTCCCATGGCAACCTCCGCCATTCTGTTCTTATCTTCAATCACTTTCTATCTTCTCCAAATATCTTTGCCTACAATGCTCTTCTCAAAGCCTTTTCTCAACACAATGCTTGGCACACTACTATTTCTTACTTCAATAATCAGTTGGTTTTGCCTAATGCTCCTAACCCAGATGAGTATACCTTCACTTCTGTGCTCAAGGCCTGCGCTGGCCTTGCCCAAGTGCTCGAAGGCCAAAAAGTTCATTGTTTTGTAACCAAATATGGCTGTGAATCAAACTTGTTTGTTAGGAATTCACTTGTGGATTTGTATTTTAAGGTGGGTTGTAATTGTATTGCCCAGAAGCTGTTTGATGAAATGGTTGTGAGAGATGTCGTTTCGTGGAATACTTTGATTTCAGGATATTGTTTTAGTGGGATGGTGGATAAAGCTCGGATGGTATTTGATGGGATGATGGAGAAAAACTTGGTGTCCTGGTCGACAATGATCAGTGGGTATGCAAGGATGGGGAATTTAGAAGAAGCACGCAAGCTGTTTGAGAATATGCCAATGAGGAATGTGGTTTCTTGGAATGCGATGATTGCTGGATATGCTCAAAATGAGAAGTATGCAGATGCTATTGAGTTGTTCAGGCAAATGCAGCATGAAGGTGGATTAGCGCCGAACGATGTTACACTTGTTAGTGTGCTTTCAGCTTGTGCACATCTTGGTGCACTTGATCTAGGAAAGTGGATTCATAAGTTTATAAGACGAAACAAGATAGAAGTAGGTCTGTTTTTAGGGAATGCATTGGCAGACATGTATGCAAAGTGTGGATGCATATTGGAGGCTAAGGGAGTGTTTCATGAAATGCAGGAGAGAGATGTTATCTCATGGAGTATAATAATCATGGGGTTGGCCATGTATGGATATGCAAATGAAGCATTCAACTTCTTTGCTGAAATGATTGAATATGGTTTAGAGCCAAATGACATTTCCTTTATGGGCTTATTAACAGCCTGCACTCATGCTGGATTGGTTGACAAGGGGCTGGAGTATTTTGACATGATGCCTCAAGTCTATGGTATAACTCCCAAGATCGAGCACTATGGGTGTGTCGTTGATCTTCTTAGCCGTGCAGGGCGTCTCAATCAAGCAGAATCATTGATTAACTCCATGCCTATGCAACCTAATGTAATAGTTTGGGGTGCACTGCTCGGTGGTTGTCAGATATACAAAGATGCAGAACGAGGAGAACGCGTTGTTTGGTGTATACTTGAACTAGACTCCAACCATTCTGGAAGTCTTGTTTATCTAGCTAATGTTTATGCTTCAATGGGCAGGCTGGACGATGCAGCTAATTGTAGGTTGCGAATGCGAGACAACAAGTCGATGAAGACACCGGGGTGCAGTTGGATTGAGATCAACAACTCGGTATATGAATTTTTCATGGGGGATTCGTCTCATCCTCAATCTCTAAGAATATATTCAATGATCAGAGAATTGAAGTGGAAGATGAAAGTGGCAGGATATAAACCAAAGACGGATCTTGTGATTCATAATATAGATGAAGAAGAGAAGGAGGATGCTCTTTCTACTCATAGCGAGAAGCTCGCCCTTGCATTTGGGCTTATCAATACAAGTGAAGGAACTACAATCAGAATAGTTAAAAACTTGAGAGTTTGCAACGACTGTCACGATGCCATAAAAATAATCTCGAAGATCGTTGAGCGAGAGATTGTAGTGCGAGATAGGAGTCGTTTTCATCATTTCAAAGATGGGAAATGTTCTTGTAATGATTACTGGTAG 1884 41.51 MRQLFEIQSQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSSPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARMGNLEEARKLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHKFIRRNKIEVGLFLGNALADMYAKCGCILEAKGVFHEMQERDVISWSIIIMGLAMYGYANEAFNFFAEMIEYGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLNQAESLINSMPMQPNVIVWGALLGGCQIYKDAERGERVVWCILELDSNHSGSLVYLANVYASMGRLDDAANCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1459868 1461751 + Chy4G068830.1 Chy04g00165 224064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00165 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 186 IPR002885 -
Chy04g00165 627 Gene3D Tetratricopeptide repeat domain 294 509 IPR011990 GO:0005515
Chy04g00165 627 Gene3D Tetratricopeptide repeat domain 187 274 IPR011990 GO:0005515
Chy04g00165 627 Gene3D Tetratricopeptide repeat domain 24 107 IPR011990 GO:0005515
Chy04g00165 627 Gene3D Tetratricopeptide repeat domain 108 186 IPR011990 GO:0005515
Chy04g00165 627 SUPERFAMILY TPR-like 189 485 IPR011990 GO:0005515
Chy04g00165 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Chy04g00165 627 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN 1 588 - -
Chy04g00165 627 Pfam DYW family of nucleic acid deaminases 535 627 IPR032867 GO:0008270
Chy04g00165 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Chy04g00165 627 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 588 - -
Chy04g00165 627 Pfam E motif 437 499 IPR046848 -
Chy04g00165 627 Pfam PPR repeat 154 183 IPR002885 -
Chy04g00165 627 Pfam PPR repeat 187 214 IPR002885 -
Chy04g00165 627 Pfam PPR repeat family 217 266 IPR002885 -
Chy04g00165 627 Pfam PPR repeat family 319 366 IPR002885 -
Chy04g00165 627 Pfam PPR repeat 394 418 IPR002885 -
Chy04g00165 627 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Chy04g00165 627 TIGRFAM PPR: pentatricopeptide repeat domain 294 321 IPR002885 -
Chy04g00165 627 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Chy04g00165 627 TIGRFAM PPR: pentatricopeptide repeat domain 158 189 IPR002885 -
Chy04g00165 627 TIGRFAM PPR: pentatricopeptide repeat domain 189 219 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00165 - - - csv:101222145 1244.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00970 Chy-Chr3:13223118 Chy04g00165 Chy-Chr4:1459868 5.50E-06 dispersed
Chy04g00165 Chy-Chr4:1459868 Chy08g01077 Chy-Chr8:17920890 1.11E-16 dispersed
Chy04g00165 Chy-Chr4:1459868 Chy02g02617 Chy-Chr2:29331420 9.97E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00165 . . . . . . . . . . Cmo01g01497 . . . . . . . Bhi09g02560 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014431 1 1 0 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 1 1 1 1 0 0 0 1 1 1 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00165 Chy_Chr04 FPKM 34.294399 41.459538 38.478844 42.01368 45.717381 34.694691 46.291283 45.891903 44.312977 51.384384