Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00173 ATGTCGATTACCACATTTTTGGGCTGTAAGATTTCGGTTCCGCCATTGTTGAACTCATCTGCAAGCAAAGCAGCTCCATGCTCCGGCGGGAATTTGCTGATTGAATGCTCGTCGAGGCCCAACAAGAAGGCGACAGCACATCATATGAAAACAAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGTAAGCCGACTGTGTATCCTCCTTTGCCGCCTCTTCCACCAGACTGGACCTTGATTTCATCCGTCTCCGGCGATGAAAATGTCGACATAGCCTCGATTTCTTCATCTGCTCAAGCACCGCGTACTAGTGAGGATTTCGCAACCCTTTTGCACTCCTCGGAGCTAAAGAAACATGACAGCATTTTGCCGGAACTTCCATTGAAGGTGGCAGCCGTTCACCGAGAATCACATAACTTTTTTTCTGGGTTAGTATCAAGAATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTCTGTCAAGTCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAAGTTCTCGTTCGCGGCGAAATCAACCCTTCAAATTGTCTCCTGGTTATGCTGTTTTTCGTGTCCTCTTTCCTGTTTCAAGAATTGACAGCCTTGTAGGTAGAGATGGGGATGGTTTATCTAAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTGGAGGACACTATCCCTGGATGTGATGAGAGAATAGCTGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACCCTGAAAAGAAGAGTAAGGAAGACAACAAGAATTCTGAAGTCGAGGAGAATGATGGTGATATTGCCAAGTTGAAAAAGAAGGAAGATAAAGATTCTCCTCAGGTGGAAGATGCTAAACAGAAGGAGGTTACTCATTCGCAGTTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAGATCTTTGATGAAGAACCGGAGGCAGATGGGACAGATGTTGAAGGTGATAAGCTGCCAACATTTGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGTTTGTGGCGACCAATGATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAACAGCTAATTGAAAATCCTCCTAATGATAAAGATCCTGTCGCCTCAAGCAATGCTGCACAGTCATCACGTTCTTCTGGACAGTCTTTCTCTAGGGCTCATGAATCTCCTCGGGGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCACGTGATGTTGGGAATTTTCATTCCAGTGCACCTTCTCTTGCTCCCAAACACTATGAAGCCTGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTAAGTTACCGTTTATTATGCCCCACTGAGAGAGTTGGAAATGTGATTGGGAAAGGAGGAGCAATAGTTAAGACTCTTCAGCAAGACACGGGCTGTGACATCAAAGTTGTTGATGGTGCCTTGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGATGACAGAATATCACCAGTGCAAGATGCTGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGCAGCAGACAGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAAGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACGGGTGCATATATTCGTATTTTAGGAAAGGAGCAGATTCCGAAGTGTGCTGGAGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACCGTTCAAGATGCCATGTTTCAGATTACTACTCGGTTGAGGCATCATTTTTTCCGTGATGCTTTTCCATCAGTATTAAGTCATTCGAATCCTGGATTCATAGATAGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGAGAATTATCGCCTCCAGGAATCTATTCAAGTTTAGGCCCCTCATTCCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTCAGTGATTTGCGGGACGATCGACCTCCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGATTAGTTGAAGGTGGTATTGGCTTGTCAGACTTTGCAGGAGCCCACCATAGAAGAATTGCTGGATTTGGAGGAGGAAATAGTCCAGCTATTATTACGAGCACCACTGTTGAAGTGGTTGTTCCTCGAAACATTGTCCCTGTTATTTGTGGAGAAAATGGGGAATGTTTGAAGCAGATTCGTCAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAGGGAGACGTCGAAACTATGATTATAATTTCTGGAACGCCAGAGCAGACCCATGCTGCTCAAAGTCTTATTCAAGCTTTTGTAATCAGCGAGACCGAGTCAAGTTGA 2526 44.58 MSITTFLGCKISVPPLLNSSASKAAPCSGGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLISSVSGDENVDIASISSSAQAPRTSEDFATLLHSSELKKHDSILPELPLKVAAVHRESHNFFSGLVSRMSAPLTPSKRSRDRSSVKSNGKGKWQKSSSSRSRRNQPFKLSPGYAVFRVLFPVSRIDSLVGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNPEKKSKEDNKNSEVEENDGDIAKLKKKEDKDSPQVEDAKQKEVTHSQLRKALFLVSEKIFDEEPEADGTDVEGDKLPTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPFVATNDELVQISGGIDVVKKALELVFQQLIENPPNDKDPVASSNAAQSSRSSGQSFSRAHESPRGSSFNTHGGPYSVPRDVGNFHSSAPSLAPKHYEACIPGRSKPSHEILSYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDIKVVDGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAAADSKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMFQITTRLRHHFFRDAFPSVLSHSNPGFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRPPFLHRPGAPLLSDRKPWSSQGLVEGGIGLSDFAGAHHRRIAGFGGGNSPAIITSTTVEVVVPRNIVPVICGENGECLKQIRQISDAKITITEPKQGDVETMIIISGTPEQTHAAQSLIQAFVISETESS* 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1504917 1511087 + Chy4G068910.1 Chy04g00173 224072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00173 841 CDD PCBP_like_KH 572 640 - -
Chy04g00173 841 MobiDBLite consensus disorder prediction 151 186 - -
Chy04g00173 841 ProSiteProfiles Type-1 KH domain profile. 766 830 - -
Chy04g00173 841 CDD KH-I 768 831 - -
Chy04g00173 841 SMART kh_6 330 405 IPR004087 GO:0003676
Chy04g00173 841 SMART kh_6 765 835 IPR004087 GO:0003676
Chy04g00173 841 SMART kh_6 569 644 IPR004087 GO:0003676
Chy04g00173 841 SMART kh_6 192 269 IPR004087 GO:0003676
Chy04g00173 841 SMART kh_6 484 560 IPR004087 GO:0003676
Chy04g00173 841 ProSiteProfiles Type-1 KH domain profile. 193 259 - -
Chy04g00173 841 MobiDBLite consensus disorder prediction 169 186 - -
Chy04g00173 841 MobiDBLite consensus disorder prediction 252 296 - -
Chy04g00173 841 CDD PCBP_like_KH 333 401 - -
Chy04g00173 841 MobiDBLite consensus disorder prediction 243 296 - -
Chy04g00173 841 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 185 248 IPR036612 GO:0003723
Chy04g00173 841 Gene3D K Homology domain, type 1 486 561 IPR036612 GO:0003723
Chy04g00173 841 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 565 649 IPR036612 GO:0003723
Chy04g00173 841 MobiDBLite consensus disorder prediction 40 63 - -
Chy04g00173 841 ProSiteProfiles Type-1 KH domain profile. 570 639 - -
Chy04g00173 841 MobiDBLite consensus disorder prediction 412 448 - -
Chy04g00173 841 Gene3D K Homology domain, type 1 764 837 IPR036612 GO:0003723
Chy04g00173 841 Pfam KH domain 334 400 IPR004088 GO:0003723
Chy04g00173 841 Pfam KH domain 768 831 IPR004088 GO:0003723
Chy04g00173 841 Pfam KH domain 196 249 IPR004088 GO:0003723
Chy04g00173 841 Pfam KH domain 488 538 IPR004088 GO:0003723
Chy04g00173 841 Pfam KH domain 573 639 IPR004088 GO:0003723
Chy04g00173 841 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 149 706 - -
Chy04g00173 841 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 766 835 IPR036612 GO:0003723
Chy04g00173 841 ProSiteProfiles Type-1 KH domain profile. 485 552 - -
Chy04g00173 841 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 487 561 IPR036612 GO:0003723
Chy04g00173 841 MobiDBLite consensus disorder prediction 408 463 - -
Chy04g00173 841 Pfam Family of unknown function (DUF5323) 28 86 IPR020526 GO:0003735|GO:0005840|GO:0006412|GO:0009507|GO:0019843
Chy04g00173 841 Gene3D K Homology domain, type 1 193 252 IPR036612 GO:0003723
Chy04g00173 841 Gene3D K Homology domain, type 1 567 647 IPR036612 GO:0003723
Chy04g00173 841 Gene3D K Homology domain, type 1 330 409 IPR036612 GO:0003723
Chy04g00173 841 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 149 706 - -
Chy04g00173 841 CDD PCBP_like_KH 487 556 - -
Chy04g00173 841 ProSiteProfiles Type-1 KH domain profile. 331 400 - -
Chy04g00173 841 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 321 408 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00173 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1276.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02107 Chy-Chr1:25779562 Chy04g00173 Chy-Chr4:1504917 4.43E-75 dispersed
Chy04g00173 Chy-Chr4:1504917 Chy09g00237 Chy-Chr9:1950901 2.00E-34 dispersed
Chy04g00173 Chy-Chr4:1504917 Chy05g01211 Chy-Chr5:16540936 7.78E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00173 Chy_Chr04 FPKM 20.249296 19.034628 13.185868 14.237753 13.090147 10.61962 13.16602 8.302156 8.552949 11.408537