Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00176 ATGTCGTCTCTACATTTCCTTTCCTTTCTCACTCTCTTTTCCCTCTTCTTTCTCCCCGGAATCAAATCCATCGACGACCAACGTCAAATCCTCACCAAATTCAAATCCTCTCTCTATACTTCAAACTCCAATGTCTTTCATAACTGGACACTCCAAAACCCCATCTGCACTTTCTTTGGAATCGCTTGTAATTCACATGGTTTCGTTACTCAAATTGACCTTTCTCAACAGGCTTTATCTGGGGTTGTTCCTTTTGATTCCCTTTGTCAATTGCCAGCCTTGGAGAAGCTAGCTCTTCGCTCCAATTCCCTCTCCGGTGAAATCACCAACAGTTTGAACAATTGTGTGAAATTGAAGTATTTGGATCTCAGTGGCAATTCCTTCTCCAGCTCTTTCCCCAGCATACATTCTTTGAGTGGATTGGAGTTTCTGTATTTGAATTTAAGTGGGATTTCAGGGAAGTTTCCATGGGAGTCAATAGGGAATTTGAAAGGTTTGATTGTGTTGAGCGTTGGGGATAACGGTTTTGATAACACAACTTTTCCGTCGGAGGTTACTAATTTGAAGAAGCTTAATTGGCTTTACATGTCAAATTGTAGTTTAACAGGGGAAATTCCAAGGTCTATTGGTAATCTCACGGAGCTTCTTAATTTGGAATTTTCAGATAATTATATAACAGGGACTATTCCGGTGGAGATTGGGAACTTGAACAAGCTACGGCAGTTGGAGTTATACAATAATCAATTAACGGGGACACTTCCAGTGGGGTTAAGAAATCTAACCGGGCTTAAGAATTTTGATGCTTCCTTGAATTATATTCATGGGGATTTATCAGAGTTGAGGTATTTGACGAACTTGGTTTCTTTGCAAATGTTTGAAAATCAAATCTCCGGTCAAATTCCGGTGGAGTTTGGTGAATTTAAGTCGCTTGTGAATCTATCACTTTATAAGAACAAGCTTACTGGGCCTCTTCCTCAATCGATCGGTTCTTGGACGGAGTTTGATTACATTGATGTATCTGAAAATTTTTTGACGGGGTCGATTCCTCCTGATATGTGTAAGAAGGGGACGATGAAGAAGCTTTTGGTTCTTCAGAATAATTTCACCGGTGAAATTCCGGCGACTTACGGTAATTGCTCTACTTTGACCCGGTTTAGAGTTAGTCAGAACTTGCTCACCGGCATTGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGACTCGAACAAGTTGGAAGGTTCGATCACTTCCGATATCGGAAAAGCTGTGGCTCTCTCGGAATTATACATCGGAAATAACCGATTCTCAGGTCGATTGCCATTAGAGATATCGCAAGCGAAATCTCTCGCTTCCGTTGATTTGAGCAACAATCAATTCTCCGATGAACTTCCGGCGACTATCGGTAACCTGAAAAAGCTCGATAGCTTCGAATTGCAGGGGAACAAATTATCCGGTTCGATTCCAGAGTCGATAGGCTGGTGTAATTCTTTGAGTATCATCAATCTGGCGGAAAATTACTTCTCTGGACATATCCCTTCGTCGCTAGGGCTTCTTCCAGTTTTAAACTCTTTGAATCTCTCCAATAACCACCTATCAGGTGAAATCCCCTCGACATTTTCGCATCTGAAATTGAGTTCTCTCGATCTTTCGAACAATCAATTAACCGGCCCAGTACCCGAAACACTCTCGAACGGAGCTTACAAAGAAAGCTTCGCCGGAAACCCTGGCCTCTGCAGTGTGGCCGACAACTTTATACAGCGATGTGCACAAAGTTCCGGCCCGTCGAAGGACGTCAGAGTACTCGTCATCGCTTTCGCCATCGGATTAATTCTTCTCAGCTTCACGCTATGGTGCTTCATAAACTTAAGAAAAAGCGGAAAAGATCGAGATCGATCGCTTAAAGAGGAATCGTGGGACCTAAAATCGTTCCACGTAATGACATTCACAGAAGAGGAGATTCTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTAACAGTCGGAAACGGAAAAGAGTTCGCCGTGAAGCATATTTGGAACACAAATCCATACGAGGAGAAGAAGAATAAGAATTACCGTAGTTCATCGCCGATGCTGGTGAAACAGAAAACAAAGTCATCGGAATTCGACTCAGAAGTCAAAACTCTGAGCTCAATCCGTCATGTGAACGTGGTGAAGCTGTACTGTAGCATAACAAGCGAAGTTTCAAGCTTGTTGGTATATGAATATATGGCAAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCCGTCGGAGCAGCGAAGGGATTAGAATATCTTCATCACGGCTGTGACCGGCCGGTAATTCACCGAGATGTTAAATCAAGTAATATACTTTTGGATGAATTTTTGAAGCCCAGAATCGCTGATTTTGGGCTTGCTAAAATTCTACACACCACAGCATCCTCCAACGACACTAGCCATGTCATTGCGGGCACCCCGGGCTACATAGCCCCAGAGTACGGATACACGTACAAAGTGGATGAGAAGAGCGATGTGTATAGTTTTGGAGTGGTTTTGATGGAGTTAGTGAGTGGGAAAAAGGCGATAGAGGGAGAGTATGGAGAGAACAAGGAGATAGTACAATGGGTATCAAAGAATTTGAAGACAAGAGAAAGTATATTAAGTATAATTGATTCAAGAATACCAGATGCATCTAAAGAGGATGCAATAAAAGTACTAAGAATTGGCATTTTGTGTACTGCAAGGCTTCCAAATTTAAGACCAAATATGAGAAGTGTGGTTCAAATGCTTGAAGGAGCTCACCCATCTCCTTTGCTTGGGATTATTATTACCAAAGATGTTGGGAGTACTAATGATAATGTAAAAAGGTTTTGTCTTAAAGATTAG 2952 42.01 MSSLHFLSFLTLFSLFFLPGIKSIDDQRQILTKFKSSLYTSNSNVFHNWTLQNPICTFFGIACNSHGFVTQIDLSQQALSGVVPFDSLCQLPALEKLALRSNSLSGEITNSLNNCVKLKYLDLSGNSFSSSFPSIHSLSGLEFLYLNLSGISGKFPWESIGNLKGLIVLSVGDNGFDNTTFPSEVTNLKKLNWLYMSNCSLTGEIPRSIGNLTELLNLEFSDNYITGTIPVEIGNLNKLRQLELYNNQLTGTLPVGLRNLTGLKNFDASLNYIHGDLSELRYLTNLVSLQMFENQISGQIPVEFGEFKSLVNLSLYKNKLTGPLPQSIGSWTEFDYIDVSENFLTGSIPPDMCKKGTMKKLLVLQNNFTGEIPATYGNCSTLTRFRVSQNLLTGIVPSGIWGLPNVNIIDLDSNKLEGSITSDIGKAVALSELYIGNNRFSGRLPLEISQAKSLASVDLSNNQFSDELPATIGNLKKLDSFELQGNKLSGSIPESIGWCNSLSIINLAENYFSGHIPSSLGLLPVLNSLNLSNNHLSGEIPSTFSHLKLSSLDLSNNQLTGPVPETLSNGAYKESFAGNPGLCSVADNFIQRCAQSSGPSKDVRVLVIAFAIGLILLSFTLWCFINLRKSGKDRDRSLKEESWDLKSFHVMTFTEEEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEEKKNKNYRSSSPMLVKQKTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMANGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTASSNDTSHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEGEYGENKEIVQWVSKNLKTRESILSIIDSRIPDASKEDAIKVLRIGILCTARLPNLRPNMRSVVQMLEGAHPSPLLGIIITKDVGSTNDNVKRFCLKD* 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1553221 1556267 - Chy4G068940.1 Chy04g00176 224075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00176 983 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Chy04g00176 983 SMART serkin_6 662 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00176 983 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 960 - -
Chy04g00176 983 Pfam Leucine Rich Repeat 117 136 IPR001611 GO:0005515
Chy04g00176 983 Pfam Leucine Rich Repeat 187 212 IPR001611 GO:0005515
Chy04g00176 983 Pfam Leucine Rich Repeat 526 547 IPR001611 GO:0005515
Chy04g00176 983 Gene3D Ribonuclease Inhibitor 25 135 IPR032675 -
Chy04g00176 983 SUPERFAMILY Protein kinase-like (PK-like) 648 953 IPR011009 -
Chy04g00176 983 Gene3D Ribonuclease Inhibitor 136 356 IPR032675 -
Chy04g00176 983 Gene3D Transferase(Phosphotransferase) domain 1 758 959 - -
Chy04g00176 983 SUPERFAMILY L domain-like 365 585 - -
Chy04g00176 983 CDD STKc_IRAK 668 954 - -
Chy04g00176 983 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Chy04g00176 983 ProSiteProfiles Leucine-rich repeat profile. 117 139 IPR001611 GO:0005515
Chy04g00176 983 SMART LRR_typ_2 523 546 IPR003591 -
Chy04g00176 983 SMART LRR_typ_2 91 115 IPR003591 -
Chy04g00176 983 SMART LRR_typ_2 548 569 IPR003591 -
Chy04g00176 983 SMART LRR_typ_2 188 212 IPR003591 -
Chy04g00176 983 SMART LRR_typ_2 475 499 IPR003591 -
Chy04g00176 983 SMART LRR_typ_2 236 260 IPR003591 -
Chy04g00176 983 SMART LRR_typ_2 403 427 IPR003591 -
Chy04g00176 983 ProSiteProfiles Protein kinase domain profile. 662 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00176 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Chy04g00176 983 Gene3D Phosphorylase Kinase; domain 1 634 757 - -
Chy04g00176 983 Pfam Protein kinase domain 664 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00176 983 Gene3D Ribonuclease Inhibitor 357 596 IPR032675 -
Chy04g00176 983 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 6 960 - -
Chy04g00176 983 SUPERFAMILY L domain-like 183 441 - -
Chy04g00176 983 SUPERFAMILY L domain-like 56 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00161 Chy-Chr1:1104811 Chy04g00176 Chy-Chr4:1553221 0 dispersed
Chy03g01278 Chy-Chr3:15810150 Chy04g00176 Chy-Chr4:1553221 1.27E-16 dispersed
Chy04g00176 Chy-Chr4:1553221 Chy12g00907 Chy-Chr12:14466675 0 dispersed
Chy04g00176 Chy-Chr4:1553221 Chy04g00178 Chy-Chr4:1557676 7.95E-10 proximal
Chy04g00175 Chy-Chr4:1542431 Chy04g00176 Chy-Chr4:1553221 0 tandem
Chy04g00176 Chy-Chr4:1553221 Chy04g00177 Chy-Chr4:1556534 3.53E-08 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71164 PF00069 Pkinase 4.90E-43 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00176 - - csv:101223100 1837.0