Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00181 ATGGAGGGTTGGGATCCGAATACCAAGTCGACGCTTACCCAAATCCCTCTATTAACGACGAAAGCCGGGCCCAGAGATGGCGCCGCATGGACGCAGAGGCTGAAGGAGGAGTACAAGGCATTGATAGCCTACACCCAGATGAACAAGTCAAATGACAACGACTGGTTTAGGATCTCAGCTGCAAATCCAGAAGGAACACGGTGGATCGGAAAGTGCTGGTACATTCATAACCTTCTCAAGTACGAATTCGATCTTCAATTCGATATTCCCGTTACGTATCCCTCCACAGCGCCGGAGCTTGAGCTGCCGGAGCTCGATGGAAAAACCCAGAAGATGTATAGAGGTGGAAAGATCTGCTTAACCATTCATTTCAAGCCGCTCTGGGCGAAAAATTGCCCTAGGTTTGGAATTGCTCACGCTCTTTGTTTGGGACTTGCACCATGGCTTGCTGCTGAGGTTCCAATTCTTGTTGACTCTGGTATGATCAAGCACAAAGACGACACGACATCAACCAGTGAATCTTAG 525 48.95 MEGWDPNTKSTLTQIPLLTTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWIGKCWYIHNLLKYEFDLQFDIPVTYPSTAPELELPELDGKTQKMYRGGKICLTIHFKPLWAKNCPRFGIAHALCLGLAPWLAAEVPILVDSGMIKHKDDTTSTSES* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1611190 1612624 + Chy4G068990.1 Chy04g00181 224080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00181 174 PIRSF Ufc1 3 168 IPR014806 GO:0061657|GO:0071569
Chy04g00181 174 Pfam Ubiquitin-fold modifier-conjugating enzyme 1 8 163 IPR014806 GO:0061657|GO:0071569
Chy04g00181 174 SUPERFAMILY UBC-like 5 164 IPR016135 -
Chy04g00181 174 PANTHER UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 5 172 IPR014806 GO:0061657|GO:0071569
Chy04g00181 174 PANTHER UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 5 172 - -
Chy04g00181 174 Gene3D Ubiquitin Conjugating Enzyme 1 170 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00181 K12165 UFC1; ufm1-conjugating enzyme 1 - csv:101222144 372.474
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g564 . . . . . . . . . . Cma01g01459 Cma09g00608 . . . Cpe06g00469 . . . . . . . . . . . . . . . Cone4ag1272 . Cone17ag1155 . Lsi04g02304 Csa03g04523 Chy04g00181 . Blo17g00083 Blo18g00093 . Bda13g01344 Bpe02g01170 Bpe14g00501 Bma01g01361 Bma02g00098 Sed13g1510 Cmo01g01511 Cmo09g00596 . . . . . Cpe02g00493 Bhi09g02539 Tan01g3886 Cmetu04g0192 . Hepe01g2194 Mch11g0739 . Cla11g01453 Cam11g1506 Cec11g1544 Cco11g1538 Clacu11g1671 Cmu11g1487 Cre11g1907 . . . Cme04g00209
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007205 1 1 2 2 2 0 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00181 Chy_Chr04 FPKM 38.516018 46.235249 16.594656 16.310265 22.85203 19.031122 21.891569 11.883822 11.409016 11.39365