Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00184 ATGGAGCTGAATGAACACTATTTGTTAGAAGAAGTTTTGGGTTTGAGAAGATCAGAAGTAATGAATTGGGAATTGGCAATCGCACCAGAAATGAATGGGTGGAATTTTGATTGTTCTGATTCTTTGCCAATGGATCAGCAGCACAATGATCTCACTTATCTTCTGAATGGGGAAGATCAGTATTTAGGCACAGAGGCGGCGATGGCAGCGGCGGGGAGCACGGGGGATTCGATGTCGTATAGTACGATGGCGGAGACGCCGGGGGGGAGTAGTTTTGAGGTTTATAATATTAGGAGTATGGAAGAGGAGGAACTTGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAAGCTAACAATGATTCATATTATTGTAAAGTTGAGCCTGTTGCTGTTGATCAATCTCCTGAAAAAATGCTACCTATTTTCAAAACGGGTGGTAGTAAGAAACTTCAGGGGCAGCCCTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGACTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCAATTGAGTACGTGAAGGAACTGATGGAGAGAATCCAAATTTTGGAAAAGGAAATTAGTAATTCAAATAAGTTGGGGATTTTGAGATCACATATTGTGAAACCAAATAATAATGAATATTTGGTGAGAAATTCAGCTAAGTTTAATGTGGAAAGAAGAGAAGAAGAAACAAAGATTGAGATATGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTAAACACTCTTGAAGCTATGGGACTTGACATTCAACACTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTCCGGGAAATGAGGTTGGAAGAATGGTGAGCACAGAAGAAGTAAAGCAAGCCTTATTTGAAAATGCTGGATATGGAGGAAAGTGCTTGTAG 981 41.28 MELNEHYLLEEVLGLRRSEVMNWELAIAPEMNGWNFDCSDSLPMDQQHNDLTYLLNGEDQYLGTEAAMAAAGSTGDSMSYSTMAETPGGSSFEVYNIRSMEEEELGILEDEIHNLEVQANNDSYYCKVEPVAVDQSPEKMLPIFKTGGSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMERIQILEKEISNSNKLGILRSHIVKPNNNEYLVRNSAKFNVERREEETKIEICCAAKPGLLLSTVNTLEAMGLDIQHCVISCFNDFAIQASCSPGNEVGRMVSTEEVKQALFENAGYGGKCL* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1633605 1636397 - Chy4G069020.1 Chy04g00184 224083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00184 326 CDD ACT_UUR-ACR-like 252 293 - -
Chy04g00184 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 216 IPR036638 GO:0046983
Chy04g00184 326 Gene3D - 150 219 IPR036638 GO:0046983
Chy04g00184 326 SMART finulus 160 209 IPR011598 GO:0046983
Chy04g00184 326 Coils Coil 98 118 - -
Chy04g00184 326 Pfam Helix-loop-helix DNA-binding domain 160 203 IPR011598 GO:0046983
Chy04g00184 326 Coils Coil 193 220 - -
Chy04g00184 326 PANTHER - 2 77 - -
Chy04g00184 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 77 - -
Chy04g00184 326 PANTHER - 81 326 - -
Chy04g00184 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Chy04g00184 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 81 326 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01286 Chy04g00184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00211 Chy-Chr3:1980537 Chy04g00184 Chy-Chr4:1633605 1.71E-08 dispersed
Chy04g00184 Chy-Chr4:1633605 Chy12g01144 Chy-Chr12:16365054 2.57E-38 dispersed
Chy02g00781 Chy-Chr2:4839171 Chy04g00184 Chy-Chr4:1633605 2.73E-85 wgd
Chy03g01286 Chy-Chr3:15895293 Chy04g00184 Chy-Chr4:1633605 5.50E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17800 PF00010 HLH 5.60E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00184 - - csv:101222621 625.935