Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00194 ATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGTAGGAGCGGATTGTTGAAGAAAGCCAAAGAACTAGCGATTCTTTGCGATGCGGATGTCGGAGTTATCATCTTCTCCAGATCGTCAGTTCTGTCAATTGCCGGACCTCGATCTTCATCGCTGAAACTTCGGTTGTTTCAGTGTTCCACTATTCCGGTTTGGGTTCAGTGGTTCTCTCTTGGTGTTTTTGGTCTCAGTTCTGCTCTTTACTTGATGACAAGAGCTTTTGAGGTGATTATTCTTTATGAGACCATAAATATTTGGTGCTGGAACTTGGGAAAATGTGGTGTCTTTTCTTCAAGAACGCTTAATAGAAGTCTATCATCAAGAGTAGATACTGGTTGTGAAGACCTCTACCTATCTGTTTGGAAAGGCAAAGAGTGGAGGCACATGTGCAACATAATACAATTGACAAGCTTTGGAGTCGCACTCCTTGGATCTCTATCACCCCAAATTGCTGCACTAATTAGAATAAGACAAGACACTCAAAATTTTCTCACATCTACTCACTTTCTAAGCTCTAGATTCATCATGAAAGCACTAATAGAACGATATAACAAAACAAAAGAGGAGAACCATCAGCTTGGGATCCCGACTTCTGAAGTCAAGTACTGGCAAAGGGAAGCAGCGACCTTACGGCAGCAACTGCAGAGCTTACATGAAAATCACCGGCAGATGATGGGTGAAGAGCTGACTGGTCTGAGCGTCAAAGACCTACAGAACCTAGAAAATCAATTGGAGATAAGTCTATGTGGTGTCCGTATGAAAAAGGACCAAATCTTAATGGAAGAGATACAAGAACTAAACAGAAAGGGAAACCTAATTCACCAAGACAATATGGAACTTTATAAGAAGGTAAACCTAATTCATCAAGAAAACCAGGAATTACACAAAAAGGTCTATGGAACAAAGGACGCCAATGGAGCCCACATAAGCAGTCTTACAAATGGACTTAGTGTTGGAGAGGATGCAGGCATACCTATTAACCTTCAACTCAGCCAGCCACAACAACAAGACAATGAGGCACCAGAAAGAGCTACAAAACTGGGTCACTATTTCAATCTTGTTCTTTTGATGGTTGCAGCAGACTACAACTACGCTAGCAAAAAGAGACCTTACACCAATATCAACCAGGAAGATACTTCTTATTTTGCATCAAGAAACGGTGTAAGGGATTTGGCGGGTCCTCTTGGAATCGGTCCTGGAACCTCTTTTCAGGAGGGAACCTTAGAGAAGCCGAAATTGAAAGAGTGTGTTAATCTCCAACTTGCTTTCTTAGTTTACCTCCTCAAAGAATGCTGA 1371 42.09 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSRSSVLSIAGPRSSSLKLRLFQCSTIPVWVQWFSLGVFGLSSALYLMTRAFEVIILYETINIWCWNLGKCGVFSSRTLNRSLSSRVDTGCEDLYLSVWKGKEWRHMCNIIQLTSFGVALLGSLSPQIAALIRIRQDTQNFLTSTHFLSSRFIMKALIERYNKTKEENHQLGIPTSEVKYWQREAATLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLCGVRMKKDQILMEEIQELNRKGNLIHQDNMELYKKVNLIHQENQELHKKVYGTKDANGAHISSLTNGLSVGEDAGIPINLQLSQPQQQDNEAPERATKLGHYFNLVLLMVAADYNYASKKRPYTNINQEDTSYFASRNGVRDLAGPLGIGPGTSFQEGTLEKPKLKECVNLQLAFLVYLLKEC* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1706043 1725241 - Chy4G069120.1 Chy04g00194 224093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00194 456 Pfam K-box region 223 309 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy04g00194 456 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy04g00194 456 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy04g00194 456 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy04g00194 456 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 54 - -
Chy04g00194 456 PANTHER SERUM RESPONSE FACTOR HOMOLOG 198 373 - -
Chy04g00194 456 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Chy04g00194 456 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 54 - -
Chy04g00194 456 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 198 373 - -
Chy04g00194 456 Coils Coil 225 252 - -
Chy04g00194 456 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Chy04g00194 456 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Chy04g00194 456 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy04g00194 456 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Chy04g00194 456 ProSiteProfiles K-box domain profile. 225 315 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00194 K09264 K09264; MADS-box transcription factor, plant - csv:101203545 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00194 Chy-Chr4:1706043 Chy07g01765 Chy-Chr7:21246910 3.50E-24 dispersed
Chy02g00774 Chy-Chr2:4800070 Chy04g00194 Chy-Chr4:1706043 2.65E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g548 . . . . Bpe02g00148 . . . . . Cma01g01466 Cma09g00600 . . . Cpe06g00463 . . . . . . . . . . . . . . . Cone4ag1281 . . Cone20ag0564 Lsi04g02291 Csa03g04509 Chy04g00194 . . . . . Bpe02g01163 Bpe14g00493 . Bma02g00105 . Cmo01g01520 Cmo09g00589 . . . Car09g00532 . Cpe02g00486 Bhi09g02527 . . . . . . Cla05g02127 Cam05g2281 Cec05g2304 Cco05g2345 Clacu05g2278 Cmu05g2141 Cre05g2263 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000442 3 7 2 1 3 2 5 3 3 3 4 3 5 2 3 8 4 5 5 4 3 3 3 3 3 3 3 9 5 2 112
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17801 PF01486 K-box 9.80E-26 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00194 Chy_Chr04 FPKM 23.919548 26.789482 14.101207 11.913871 17.217283 16.891392 18.898439 13.016997 12.557436 12.961391