Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00196 ATGTCCAGAGCCGTCCGGTTGCAGATACGAGATCATCATGTGGTGGTGGATAATGGTATATTGCAACTAACTTTATCAAAACCAGATGGAATTATCACTGGTGTGCGATATAATGGTGTTGACAATCTACTTGAAGTTCTTAATCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGAAGCAAGGGAGTATTTGACGTGATTAAAGGGTCAGGGTTTAGGGTTATAGTGGAAAACGAGGAACAGGTTGAGCTTTCTTTTGTGAGAATGTGGGATCCCTCCCTTGAGGGCAAGTTTGTTCCTTTGAATATAGACAAAAGGTTCATAGTACTACGTGGTTCCTCTGGATTTTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTCGATATTGGTGAAACCCGGATTACCTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCTGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTATCCTGAAGCTGTCTTGCTTACTAATCCCAAGAACCCTGCTCTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAACAACTTAAAGGTTCATGGATGGATAAGCACCAACCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTTCGGTCAGGTGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTTAGTGCTCATTATGCGGGACAAGATTTGGTGCCGAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTATATCTTAATTCCACCTCAGTTGGAGATGACCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCGAAAGTTGGCCATATAGTTTCCCTGCATCAGAGGATTTCCCAAAAAAAGATCAACGAGGCATTGTTAGTGGTAGGCTACTGGTTTTTGATAGGTATGTGGATCAAGACTATCTTCCAGCCAGTGGAGCCTTCGTTGGATTGTCTGCACCAGGAGAAGTGGGATCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACGTACGCACCGGTGAGTATAATCTATATGCATGGGTTCCTGGCTTCATTGGAGATTATCGCTGTGAAGCCCTCATCAACGTAAGCCAAGGATCTTGCATTGAAATGGGTGATCTTGTATATGAACCTCCTAGAGATGGGCCTACGCTTTGGGAAATAGGCATTCCCGATCGTTCTGCATCCGAGTTCTATGTTCCTGATCCTAATCCAATACATATTAATAAACTCTTTGTTGACCATCCTGACAGGTTCCGGCAGTACGGGTTGTGGAACAGATACGCTGAATTATACCCGAACGAGGATTTAGTATACACAGTTGGCACAAGCGACTATAGAAAAGATTGGTTCTTTGCTCATGTCCCTAGGAAGACAAACAGTAATTCACATGAAGGAACTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAGTATGTATACACTACGGGTTGCAATTGCTTCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAACGATCCGAGATCGAAGCGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGGTTTATAGTGTGGGCGTAGCGGGGTGCCATCTTGTTGAAGGAGAAAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCGTTTCAGGGTATCATGTATGATTATATCCGTCTCGAAGGTCCTCCAACAAAGTGA 1902 43.74 MSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGVFDVIKGSGFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKKDQRGIVSGRLLVFDRYVDQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHVRTGEYNLYAWVPGFIGDYRCEALINVSQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVDHPDRFRQYGLWNRYAELYPNEDLVYTVGTSDYRKDWFFAHVPRKTNSNSHEGTTWQIKFKLDRVDHKSMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWVYSVGVAGCHLVEGENIIFLTQPRCTSPFQGIMYDYIRLEGPPTK* 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1740653 1747176 + Chy4G069140.1 Chy04g00196 224095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00196 633 CDD RGL4_C 441 628 - -
Chy04g00196 633 Pfam Polysaccharide lyase family 4, domain II 353 424 IPR029413 -
Chy04g00196 633 Gene3D - 4 303 IPR014718 GO:0030246
Chy04g00196 633 Gene3D - 327 422 - -
Chy04g00196 633 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 632 - -
Chy04g00196 633 CDD RGL4_N 13 292 - -
Chy04g00196 633 SUPERFAMILY Galactose mutarotase-like 11 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Chy04g00196 633 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 632 - -
Chy04g00196 633 Pfam Rhamnogalacturonate lyase family 8 199 IPR010325 -
Chy04g00196 633 SUPERFAMILY Galactose-binding domain-like 436 628 IPR008979 -
Chy04g00196 633 CDD RGL4_M 330 429 IPR029413 -
Chy04g00196 633 SUPERFAMILY Starch-binding domain-like 343 425 IPR013784 GO:0030246
Chy04g00196 633 Pfam Polysaccharide lyase family 4, domain III 439 627 IPR029411 -
Chy04g00196 633 Gene3D - 437 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00196 Chy-Chr4:1740653 Chy04g00198 Chy-Chr4:1758057 0 dispersed
Chy04g00196 Chy-Chr4:1740653 Chy04g00197 Chy-Chr4:1750002 0 tandem
Chy02g00773 Chy-Chr2:4789319 Chy04g00196 Chy-Chr4:1740653 0 wgd
Chy03g01323 Chy-Chr3:16226937 Chy04g00196 Chy-Chr4:1740653 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00196 K18195 - csv:101203947 1307.35