Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00197 ATGAACTCCAGTCACGCCGTCTCGACGGCCTCCCCGCCACCTCCGCCGCTGCAACTGCACATTCTCGACCAACATGTTGTGATGGACAATGGAGTAATCAAAGTCAATTTGTCGAATCCAAAGGGTATGGTCATTGGAATAGAGTACGAAGGGATTGAAAACTTGCTTTCTACTGATAATGATGAAGACAATAGAGGATATTGGGACATCGTTTGGAATTTGAAAGGAAGTTCAGGAACCAAAGGGATTTTTGATCGATTGGAAGCAACAGACTTCAAGGTAATTGTTGAAAATGAAGAACAAATAGAACTCTCATTCAGCAGAACTTACAACAATTCATCCACCGGAGGCAACCTCATTCCCTTAAACATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATACGTATGCCATTTACGAACACTTAAAAGAATGGCCTGCATTTAACCTCGACAACACTAGAATCGCATTCAAGCCACGAAAAGACAAGTTTCATTACATGGCTGTAGCAGATACGAGACAAAGATTCATGCCTTTGCCTGACGATCGAAAGCCACCGCGAGGGCAAGCCTTAGCTTATCCCGAGGCCGTGCTTCTTGTCGATCCCATAGAACCAGACTTCAAGGGAGAGGTAGATGACAAATACCAATACGGCTGCGAAAGCAAAGACAGTCGGGTTCACGGGTGGATATCCACTGACCCGCCCATTGGGCTTTGGCAAATCGCACCCACCGAGGAATTCCGCTCCGGTGGACCCCTCAAACAATTTCTCACCTCCCACGTCGGTCCCACAACCCTCACCGTTTTTCATAGCACTCATTACGCAGGAGAGGATATGGTTATAAAGTTTGGAGATAATGAGCCATGGAAGAAGGTTTATGGTCCTATCTTTATCCATCTCAATTCCTTGCCTGAAGGAGAGGATCCGCTTAGACTTTGGCAAAATGCTAAACAACAGATGATGGCTGAAGTTCAAAGCTGGCCTTACAGTTTCATTGCTTCTGAGGATTTTCCCAAATCCGATCAACGAGGCACCGTCAGCGGCAAATTCCTAATCCGGGAGAGATATGTGAGTGATGAATCTGTGCCTGCTAGTGGTGCTTATGTGGGCTTGGCACTTCCCGGAGAACTTGGGTCTTGGCAAAATGAAAGCAAGGGCTACCAATTTTGGACAAGAGCAGATCAGAATGGAAGTTTCTCTTTGAATAATGTTCGGAGTGGAAATTATAGTCTTTATGGATGGGTTCCCAATTTCATTGGCAATTACCAATACAGTGCTTTCATCGTCGTAACCCCAGGCAGTGATATCAAAGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTACATACCCGATCCTAATCCAAAGTATATTAACAAACTCTATGTTAATCATTCAGATCGGTTTAGGCAGTATGGATTATGGGAAAGATATGCAGAGTTATATCCTGACGAGGATCTAGTTTACACAGTAGGCCTTAGTGACTACCGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAAATAGGAGACAACAAATATGCCGGAACTACCTGGAAAATCAACTTCCAACTTGACAGTCCAGATACTCATGGAACATATAGGCTGCGTCTTGCATTGGCCACTGCACATGGTGCGGAGTTACAAGTCCGGCTGAATGATGCACAAGCACTTCCTCCATTATTTACAACAGGATTGATTGGAAAGGACAATACTGTAGCTAGACATGGAATCCATGGTCTCTATCGACTTTACACGGTTGACATTCCGGGCGGTGAGCTTGTGGTGGGCAACAATACAATTCTTCTTACGCAAGCAAGTAGCAACAGCCCTTTTGTGGGGATCATGTATGATTATATTCGTCTGGAAGGACCCTTAACATCCAAAATGTAA 1956 44.68 MNSSHAVSTASPPPPPLQLHILDQHVVMDNGVIKVNLSNPKGMVIGIEYEGIENLLSTDNDEDNRGYWDIVWNLKGSSGTKGIFDRLEATDFKVIVENEEQIELSFSRTYNNSSTGGNLIPLNIDKRFVMLRNSSGFYTYAIYEHLKEWPAFNLDNTRIAFKPRKDKFHYMAVADTRQRFMPLPDDRKPPRGQALAYPEAVLLVDPIEPDFKGEVDDKYQYGCESKDSRVHGWISTDPPIGLWQIAPTEEFRSGGPLKQFLTSHVGPTTLTVFHSTHYAGEDMVIKFGDNEPWKKVYGPIFIHLNSLPEGEDPLRLWQNAKQQMMAEVQSWPYSFIASEDFPKSDQRGTVSGKFLIRERYVSDESVPASGAYVGLALPGELGSWQNESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYSAFIVVTPGSDIKVGELVFEPPRDGPTLWEIGIPDRTAAEFYIPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDEDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKINFQLDSPDTHGTYRLRLALATAHGAELQVRLNDAQALPPLFTTGLIGKDNTVARHGIHGLYRLYTVDIPGGELVVGNNTILLTQASSNSPFVGIMYDYIRLEGPLTSKM* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1750002 1756794 + Chy4G069150.1 Chy04g00197 224096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00197 651 Pfam Polysaccharide lyase family 4, domain III 455 643 IPR029411 -
Chy04g00197 651 Pfam Rhamnogalacturonate lyase family 19 215 IPR010325 -
Chy04g00197 651 Pfam Polysaccharide lyase family 4, domain II 369 441 IPR029413 -
Chy04g00197 651 Gene3D - 343 442 - -
Chy04g00197 651 CDD RGL4_N 25 306 - -
Chy04g00197 651 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 8 650 - -
Chy04g00197 651 CDD RGL4_C 457 644 - -
Chy04g00197 651 Gene3D - 453 644 - -
Chy04g00197 651 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 8 650 - -
Chy04g00197 651 SUPERFAMILY Starch-binding domain-like 344 442 IPR013784 GO:0030246
Chy04g00197 651 SUPERFAMILY Galactose-binding domain-like 452 644 IPR008979 -
Chy04g00197 651 CDD RGL4_M 346 445 IPR029413 -
Chy04g00197 651 Gene3D - 23 293 IPR014718 GO:0030246
Chy04g00197 651 SUPERFAMILY Galactose mutarotase-like 25 306 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00408 Chy-Chr2:2571672 Chy04g00197 Chy-Chr4:1750002 0 dispersed
Chy04g00197 Chy-Chr4:1750002 Chy06g01589 Chy-Chr6:18090060 0 dispersed
Chy04g00196 Chy-Chr4:1740653 Chy04g00197 Chy-Chr4:1750002 0 tandem
Chy04g00197 Chy-Chr4:1750002 Chy04g00198 Chy-Chr4:1758057 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00197 K18195 - csv:101203789 1271.53