Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00198 ATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCACGTAGTTATGGATAATGGTATACTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAATAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTTGTGTGGAACTCTGGGACTCCGGGAACTGCAGGAACATTCGATGAGATGAGAGGAAGAGAATTTGAAGTGATGGTGCAAAATGAGGAACAGATAGAGCTGTCATTTAGAAGGAATTATTCATTCAAGGACAAGGCTGTACCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCATATGCCATCTATGAGCACATGAGGGAATGGCCACCATTCAACCTTCCTCAAACGAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCACTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCTGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTGTTGCTGGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTAGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGTAGTGAGTTCAGATCAGGTGGACCCCTCAAACAGAATCTGACATCTCATGTGGGCCCATATGCTCTTGCGATGTTTCTTAGTGCTCACTATTCAGGAGAGGACTTGGTGTTGAAGGTCAGTCCTGATGAGCCTTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGTCGATGGAAGTTCAAAGTTGGCCATATTCTTTTCCAGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGAAAATTATTTGTCCTTGATAGATATGTTAACGAGGAGAAAATGCCGGCAACTGATGCGTATGTGGGACTTGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAAGAAGGGCTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCGTTTAGCATTGAACACGTACGCATTGGGGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGTTCTCATTAATGTGTCTCCAGGTAGTGATATGGACGTAGGCGATCTTGTTTACGAGCCACCTAGGAATGGGCCCACATTATGGGAAATAGGCATTCCTGATCGCTCTGCTGCAGAATTCTATATTCCTGATCCTGATCCAAAGTACATTAACAAATTGTATGTCAATCATCCGGATAGATTCAGGCAATATGGACTGTGGGAAAAATATGCTGAGTTATATCCTGATGCAGACTTGGTATATTCAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTCGCACATGTTAATCGAAAGAGGACTGATGGATCCCATTTAGCAACCACATGGGAAATCAAGTTTAAACTTGATAATATCATAGATAAGGGCGTCACCTATACATTGCGAGTGGCTCTGGCCACTGCCAATGTTGCTGAATTACAGATTCAGGTAAATAATCCAGAAGCAAAGCCAAGTTTATTTTCAACAGGAGTGATTGGACATGACAATGCAATTGCTAGGCATGGAATTCATGGACTCTATCGACTCTATAGTGTTGACATATTAGGATCTCTACTTGTGGAAGGAGAAAACACCATCTTCCTTTCACAAATTATAAACAGTTCATCTTTCAACGGCGTCATGTATGATTATATCCGCCTCGAAGGCCCTCCATCCGATTCAATACCTTTACAAATTCATTAA 1929 41.94 MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTPGTAGTFDEMRGREFEVMVQNEEQIELSFRRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHMREWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKVSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMSMEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNEEKMPATDAYVGLAAPGDVGSWQTEKKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDVLINVSPGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYIPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDADLVYSVGVSDYTKDWFFAHVNRKRTDGSHLATTWEIKFKLDNIIDKGVTYTLRVALATANVAELQIQVNNPEAKPSLFSTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIINSSSFNGVMYDYIRLEGPPSDSIPLQIH* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1758057 1764496 + Chy4G069160.1 Chy04g00198 224097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00198 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
Chy04g00198 642 Gene3D - 328 427 - -
Chy04g00198 642 SUPERFAMILY Starch-binding domain-like 328 427 IPR013784 GO:0030246
Chy04g00198 642 CDD RGL4_M 331 430 IPR029413 -
Chy04g00198 642 Gene3D - 7 268 IPR014718 GO:0030246
Chy04g00198 642 CDD RGL4_C 442 630 - -
Chy04g00198 642 Pfam Polysaccharide lyase family 4, domain III 440 629 IPR029411 -
Chy04g00198 642 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824|GO:0005975|GO:0030246
Chy04g00198 642 Pfam Rhamnogalacturonate lyase family 7 200 IPR010325 -
Chy04g00198 642 CDD RGL4_N 14 301 - -
Chy04g00198 642 Pfam Polysaccharide lyase family 4, domain II 355 425 IPR029413 -
Chy04g00198 642 Gene3D - 438 630 - -
Chy04g00198 642 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 1 637 - -
Chy04g00198 642 SUPERFAMILY Galactose-binding domain-like 437 630 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00773 Chy-Chr2:4789319 Chy04g00198 Chy-Chr4:1758057 0 dispersed
Chy03g01323 Chy-Chr3:16226937 Chy04g00198 Chy-Chr4:1758057 0 dispersed
Chy04g00196 Chy-Chr4:1740653 Chy04g00198 Chy-Chr4:1758057 0 dispersed
Chy04g00198 Chy-Chr4:1758057 Chy06g01589 Chy-Chr6:18090060 0 dispersed
Chy04g00197 Chy-Chr4:1750002 Chy04g00198 Chy-Chr4:1758057 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00198 K18195 - csv:101204193 1312.36