Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00201 ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATATGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACGGAAAGCGACCCGAAACCGACTCAGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCGGTATCGGATCTTTTCACGGGGGACAAGGCACAAACCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGGTCGGCAACAGCTCACGTGAAAACTTGGCTTTCCAACTGCGATGAGGACCGCGAACTTTTGCTTCCGCCACCTACCTCGGAGCCCGAGCACGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGGGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTGAAAGATTCATCGGCTTCGAAGATATTGTCCTCGCACACGGCCAGGCCGGAAGAGATTGAGGTTGGAGATGATAAGGAAAACATAGCACAGAAAGCGACAGAGAGTTATTACCTGCAACTTGCTTTAGCTGCAACGCTTCGTTCTCATGCTAATCTCGCCGGCGATCCTGTGCTTATGGAAGAAGGCAGGGTGGAAATTACGGACGCAGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGTCTGTCTTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGATTTTGAGGAAGGTAGACGGCTACCTTCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTTGATAGACGTGGGGACTCTCGACTGAAAGAGCTTGAAGACAAAGCACAGGAACTATATTGTGCTTCAGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGGATTTTTCCGGTGGAGCAAGGGGGGTTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAAATGCATAGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCATCGTGCAATCCTTTTCAAGAAATTGGCTGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCTGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATTGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCATCAATTAATGGAGGGTTCCAATCTTCAATGCCTTCACCTCTCCAGATTTCTCATTTAAAAGAGTTTCAAGAACCTTACGTGGAAAGCTATTTCAATCATCAAACTGTCGGGTCAAAGCAAATCTGTGGTTTTCCTGAATATCCTCTACGTTCAGGTTTTGGACAGTACCAGATGAATGGGGGAAGCACTTTACATATGAATTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGGATGGGTATGAGATCGACTCAGTTGTGTTTGGAGACAAAAGTGAGCAAGGAGTGTGTACTTCAGAATCATATAATGCCATCCACTGGGGCTGATGCCTCCGAGGTGTTGAGTTCTGTTGGTGCATCTTTTTGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGCAGTTGTGGCAGGGATTTCAGTGAATGAAACCATTAATCCGTCCAAATTAACCTTGTCAACTCAAACTGATTCGAAGGAGGTTGAGGGTAGATCTCAAAATTGTTCAGCATCAACATATCCGAAATATTTGACACTTGAACCATCACTTGCAATGGACTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTCGGAGCTGGTTCATTTGGTACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCGTGCAGGATTTCCATGATGATCAGTTAAAAGAGTTTTTAAGAGAGGTTGCAATAATGAAGCGAGTACGCCATCCGAATGTGGTACTTTTTATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATACTTGCCCAGGGGTAGTCTATACCGCCTAATCCACAGGCCATCTTCTGGTGAATTGATGGATCAAAGGAAACGATTGCGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAGTCTCCCAACTTGTTGGTTGACAAAAATTGGACAGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCAAAATCTGTTGCTGGAACGCCCGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTCACCATGCAACAACCATGGAGTGGGCTTGGCCCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAATAGAAAGCTTTCTATCCCATCGAGTACTTCTCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTTGCAAGCATAGTCGAGTCCCTAAAAAAATTGCTGAAATCTCCACAGCAGTTGATAGCCATGGGTGGAACGTGA 2772 45.53 MPHRTTYFFPRQFPDRGYDSASTSKHILDHEKKINKDTFSTESDPKPTQRPARDFSVTKSSAVSDLFTGDKAQTNKKLPAFYDWLVDKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPEHDTTSVKDRSVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHTARPEEIEVGDDKENIAQKATESYYLQLALAATLRSHANLAGDPVLMEEGRVEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNDFEEGRRLPSLMSLRTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGIFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKLLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLQISHLKEFQEPYVESYFNHQTVGSKQICGFPEYPLRSGFGQYQMNGGSTLHMNSGAETDKLVDQAWMGMRSTQLCLETKVSKECVLQNHIMPSTGADASEVLSSVGASFCENKVVIEEIYQEEAVVAGISVNETINPSKLTLSTQTDSKEVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPSSTSPLLASLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGT* 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1853375 1861281 + Chy4G069190.1 Chy04g00201 224100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00201 923 Gene3D Phosphorylase Kinase; domain 1 646 730 - -
Chy04g00201 923 PRINTS Tyrosine kinase catalytic domain signature 834 856 IPR001245 GO:0004672|GO:0006468
Chy04g00201 923 PRINTS Tyrosine kinase catalytic domain signature 768 786 IPR001245 GO:0004672|GO:0006468
Chy04g00201 923 PRINTS Tyrosine kinase catalytic domain signature 878 900 IPR001245 GO:0004672|GO:0006468
Chy04g00201 923 PRINTS Tyrosine kinase catalytic domain signature 727 740 IPR001245 GO:0004672|GO:0006468
Chy04g00201 923 MobiDBLite consensus disorder prediction 109 133 - -
Chy04g00201 923 CDD STKc_MAP3K-like 659 907 - -
Chy04g00201 923 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Chy04g00201 923 Gene3D Transferase(Phosphotransferase) domain 1 732 919 - -
Chy04g00201 923 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 109 921 - -
Chy04g00201 923 MobiDBLite consensus disorder prediction 22 40 - -
Chy04g00201 923 SMART serkin_6 653 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00201 923 ProSitePatterns Protein kinases ATP-binding region signature. 659 680 IPR017441 GO:0005524
Chy04g00201 923 MobiDBLite consensus disorder prediction 19 57 - -
Chy04g00201 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Chy04g00201 923 SUPERFAMILY Protein kinase-like (PK-like) 627 906 IPR011009 -
Chy04g00201 923 ProSiteProfiles Protein kinase domain profile. 653 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00201 923 Pfam Protein tyrosine and serine/threonine kinase 653 907 IPR001245 GO:0004672|GO:0006468
Chy04g00201 923 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 109 921 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00201 Chy-Chr4:1853375 Chy04g01970 Chy-Chr4:25583218 3.64E-63 dispersed
Chy12g01122 Chy-Chr12:16191008 Chy04g00201 Chy-Chr4:1853375 6.87E-52 dispersed
Chy04g00201 Chy-Chr4:1853375 Chy08g00913 Chy-Chr8:16570660 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71165 PF07714 PK_Tyr_Ser-Thr 5.30E-64 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00201 - - csv:101204522 1800.79