Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00206 ATGTTGCAAAGAGCGGCTAGTAATGCGTATTCATGGTGGTGGGCAAGTCATATCCGAACCAAACAATCGAAATGGCTCGAACAAAACCTCCACGATATGGAAGAGAAGGTTGATAGCATGATGAGAATCATTGAAGGCGATGGAGATTCTTTTGCAAGGAGGGCTGAAATGTATTACAGGAAGAGACCTGAACTTGTAGAACATGTAGAAGAGTCTTTCCGAGCATACCGAGCTTTAGCAGAGAGATATGATCACCTATCAAAAGAGTTTCAAGGAGCAAATCGGACAATAGCTTCGATTTTTCCCGAACGAGTTCATTACACAATTGATGATGATGATTGTGAAGTTGATTTCTTTTCTCGAGACTCATCTTCAGCGAAAAGTCCTTCCCAATTTTCAAATGAATTGGATGGCTCCCCAAAACCAGGAATCCCTGAAGTTCCAAAGTTTCCCGAGAGAAGTTTTAGAAGTCCTTCCATGATAAGAAGAAAGACACAACTAAAGAGAAATGAAAGCACTCCTAGAAATAGAGTTGCTTTAACTCCAAAATCGGGGCTCGATAAAACCGAAGCCTTAGAAGAGATCGATATGCTACAGAAAGAAATTCTGGCCCGACAGACGGAAATGGAATTCGTGAAGAGTTTGTATGAACGTGAATGCGAGAAATATTGGGAGATGGAAAGCAGTATCACAAAGATGCAAAAGAGAGTAAGCAACTTGCAAGACGAGTTCGGGATTGGCACTGTTATTGAAGATAATGAAGCTCGAACATTAATGGCAACAACTGCTCTAAAATCTTGCAGAGAAACTCTGACCAAATTGCAAGAGGAACAGGAGAAAACGGTTGAAGAAACAAAACTAGAGAAAGGTAGAATAAAAGATGTAGTTACAAAGTTTGAAAGCCTCAAATGTAAGTTCCTTCCAAAGCCAATAAACCATCACGAGTCCACTGATTTACATGAAGATCAACGCAAGGAACCAGAATTGAATATCTCAGATCAAGTAGTCAATTGCACAGCAGAAGATAAACATGATATAGAACTTCTTGATCAGAAGATCAGGGAACATCTGGAAATGGATTCGAACAGCTCGTTCACTATTTCTGAGTTGGCTGAGAAAATTGACGAACTAGTAAATAAAATTGTGACACTTGAAGCTGCAGTTTCTTCTCAAACAGGTGCTCCATGCGAACGTCCAACAGTTGGAAGAAGACAAGGAAATTCTAATGGACAGTTCAGAAACCATGAAGAAGAAGATAAAGGAATTGGAAGCTGA 1275 40.0 MLQRAASNAYSWWWASHIRTKQSKWLEQNLHDMEEKVDSMMRIIEGDGDSFARRAEMYYRKRPELVEHVEESFRAYRALAERYDHLSKEFQGANRTIASIFPERVHYTIDDDDCEVDFFSRDSSSAKSPSQFSNELDGSPKPGIPEVPKFPERSFRSPSMIRRKTQLKRNESTPRNRVALTPKSGLDKTEALEEIDMLQKEILARQTEMEFVKSLYERECEKYWEMESSITKMQKRVSNLQDEFGIGTVIEDNEARTLMATTALKSCRETLTKLQEEQEKTVEETKLEKGRIKDVVTKFESLKCKFLPKPINHHESTDLHEDQRKEPELNISDQVVNCTAEDKHDIELLDQKIREHLEMDSNSSFTISELAEKIDELVNKIVTLEAAVSSQTGAPCERPTVGRRQGNSNGQFRNHEEEDKGIGS* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1891619 1893620 - Chy4G069240.1 Chy04g00206 224105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00206 424 PANTHER PROTEIN NETWORKED 2D 1 393 - -
Chy04g00206 424 MobiDBLite consensus disorder prediction 120 180 - -
Chy04g00206 424 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Chy04g00206 424 Coils Coil 264 288 - -
Chy04g00206 424 Coils Coil 367 387 - -
Chy04g00206 424 MobiDBLite consensus disorder prediction 389 424 - -
Chy04g00206 424 MobiDBLite consensus disorder prediction 389 409 - -
Chy04g00206 424 PANTHER PROTEIN NETWORKED 2A 1 393 - -
Chy04g00206 424 Coils Coil 223 243 - -
Chy04g00206 424 MobiDBLite consensus disorder prediction 410 424 - -
Chy04g00206 424 Pfam KIP1-like protein 11 84 IPR011684 GO:0003779
Chy04g00206 424 MobiDBLite consensus disorder prediction 156 171 - -
Chy04g00206 424 MobiDBLite consensus disorder prediction 121 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00206 - - - csv:101205249 742.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00206 Chy-Chr4:1891619 Chy06g01599 Chy-Chr6:18405564 5.52E-97 dispersed
Chy04g00206 Chy-Chr4:1891619 Chy01g01555 Chy-Chr1:21477802 1.43E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g520 . . . Bda03g00455 Bpe02g00141 . . Bma01g02583 . . Cma01g01647 Cma09g00594 . . . Cpe06g00455 . . . . . . . . . . . . . . . . . . . Lsi04g02281 Csa03g04495 Chy04g00206 . . . . . . . . . Sed05g1559 Cmo01g01699 Cmo09g00580 . . . Car09g00525 . . Bhi09g02499 Tan01g3853 Cmetu04g1542 . Hepe01g2171 Mch11g0710 . Cla11g01426 Cam11g1481 Cec11g1511 Cco11g1507 Clacu11g1642 Cmu11g1460 Cre11g1878 . . . Cme04g00236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007068 1 1 1 1 1 0 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 3 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00206 Chy_Chr04 FPKM 4.12676 0.966724 3.120553 2.595586 0.569659 0.660802 1.248037 0.144235 0.0 0.201879