Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00208 ATGGAAAACTTAGATGGAAAGAGTTCGGATTATTCGCAATGCGTTCGCGTTGCTGTTAATATTAGACCTTTGATTACACCGGAGCTAATGGTTGGATGTACGGATTGTATTACAGTTGTGCCTGGCGAGCCTCAGGTTCAAATTGGATCGCATATATTCACTTACGATAATGTGTATGGTAGTGCTGGATCGCCATCTTATGGATTATACGATGACTGTGTTGCTCCATTGGTGGAGGCATTATTTCAGGGTTATAATGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAAACCTACACAATGGGGACAAATTATAGCGGCGAAGGAACCAATGATGGAGTAATACCTAAAGTCATGGAAAAAATATTTAAAAAGGTCGAGGCAATGAAGGAATCGACAGAGTTCTTGATCAGAGTATCATTTATTGAGATATTCAAGGAAGAAGTTTTTGATTTGCTTGATGCTAGTACTTGCGTTAATACAAAGGGTGAAGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACTGTTAATGGTGGAATTACGCTTGTTGGTGTCACTGAGGCCGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGTCAGTCAAGTCGATCACATGCCATCTTTACTATTACTATGGAGCAAAAGAAAAAGCTTGGGCAAGGCACGTCTCATGATGATACATGCGATGACATTCTATGTGCAAAGCTCCATTTGGTGGATCTTGCTGGTTCTGAAAGAGCAAAACGAACTGGTGCCGATGGCGTGCGCTTTAAAGAAGGTGTTCATATCAACAAAGGCCTTTTGGCACTCGGCAATGTCATAAGTGCACTTGGAGATGAGAAGAAAAGAAGAGAAGGATGTCATGTTCCCTATCGTGATAGCAAGTTAACGCGTTTGCTACAGGATTCTCTCGGAGGCAACAGCAGAACGGTGATGATTGCTTGTGTGAGTCCTGCCGACTCAAATGCAGAAGAGACCCTAAATACGCTGAAATATGCCAATCGTGCTCGCAATATTCAAAATAAAGCAGTCATCAACCGAGATCCTGTAGGAGCTCAAATACAGAAAATGCGAAGTCAAATTGAGCAGTTGCAAGCTGAGCTTCTGTTCTATCGTGGTGATGCAGGTTTACCGTATGAAGAGCTACAGATTCTAAAGCACAAAATATCATTGCTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAACTTCAAGAACGTCGAGTCACTTGTGACCATCTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAATTTGCCATGATAATTGAATCTGTGCGTAATGGAAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGCGAATTGCTTAAGAGTTATGTCTCAAAAATTCAAGAGCTAGAAGGCGAGGTACTGAGATTGCAAAGCTTTAAGAGTTCAAAACACAGTCAATATGCTGATCTTGCGGAGTCTGATGATGATAGGCCCCAGTCTGGTAACATCTTATTTCCATGTTCAAATGAGTATTCATCGGAATATGATGCCAAAGCTGTAGATATTTCAGATGGAATTGAAGATCATGAAAAGGAGCTTGAACATTCGACAATGCAAGAAAGACTAGATAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCTGGTACGGATACCTCTGTTCTTAAACAACATTATGAAAAAAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCAAACATATCTTCTACATCTGATGATGGGGCTCAAAAGTTGAAGCAAGATTATCTTCAGAAATTGAATTTCTTGGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAAGCTCAACTATTGAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAGAAGGTTCAACTTCAACACAAGATTAAACAAGAATCTGAGCAATTTAGATCATGGAAGGCTTCAAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAATGAATATGAAATGCACAAGCTCTTAGCTTTGAATCAAAGGCAGAAGATGGTCTTGCAACGAAAAACAGAAGAAGCTGCCGCGGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAAACTTCCAGTGGGGGATCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCATGAGCTTGAAGTTACGGTTCGGGTGCACGAAGTTCGTTCTGAATATGAACGCCAAATGGAAGAGAGGTCTAAGATGGCCAAAGAATTGTCCAAGCTCAAGGAGGAGGAACTGAACAGAGGATCGAATTTAAGCGACTGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTCGAAAACATGCTCGCTACATCATCTAGCTCTCTGGTTTCTATGGCCTCACATTTGTCGGAGGCAGAAGAGCGTGAACGCATTCTTGGTGGCAGGGGACGTTGGCATCAAGTTCGCTCTCTAGCCGATGCAAAGAATATTATGAATTTTTTGATGAATTTAGCATCTTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTGCTTCAAGAGAGAAGGATTCGGAAATTAGAGAACTGAAACAAAAAATAGTAAATCTTAGCGGAATGCTAAAAAAATCAGAAGCACAGAAGGCAGAGCTTATTCATGAGAACTCAGCTTTGAAAAGATATTCTCAAGGGCATAACTATGATTTACGAAAACAGGAGCATCGAAACTCTGTCGTCATACCGGCAGACATGGATACCTCAGAATCAGATTATGCAAATTATAGTTCAGATGGCGATGATGATAACTATGATTGGGAGAGATCCATGAAACGGAGATTGAATAGAAAAAAAACCTCTAAAACCAAGGGTCGTGTAAGTATGGTTGTCCCAAATGGCACAGATAGTACGGAGTTTAACTTGGAGAGTTCTGGCGACAGCATACTTCGCGAGAACGAATCTACGGCTACTACCGTTGTTTGTTGTACTTGTAGCAAATTTTCTTCCTGCAAGACATCAAAGTGCCAATGCAGAGCTAATGGTGGTGCTTGTGGCTCGTCGTGTGGTTGCATACCATTAAAGTGTTCAAACAGAGGCAGTAAAAGTGATCGGGACGCTTCAATGCAACCAGATTTGTTCAAGGATGTTCGAAATGGTACGGAAAATGACGAAACCGATGAGGAAAACCACGACCTTGTTTCTCATGGTGCTCGGTTACTTCAAAATGCATTGGCTGAGAGGCCAAGTGATGCTCCTCCTACTGCTGAAGATGGTGGTGCAAAAAGAAAGCCTCTATCAGACATCGGAAACACATTGGTAAAATCAAAGGCAAACAAGGCAAACCAAAGAAAGAAATGGCGAAAATCTACAATTCAACTGATTCCAACCCCACAACAAGCGTCTTCCGAACCCGAAAAACCTGAGGCCACCGAGAAGACAGAGAATGAGCCAAATGAGGTTGTCAACATCCCGTTGAAACTTCCCCGAGCTATGCGATCCGCTGCCCTTAATGGTGGCGGCAACAACCTACTGAGAGAGAGAAACGCCGATCACCCCGAAGATTCCATCGGCGGCAACAAAGGACATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAAAATTGCAACCGTTAA 3822 42.1 MENLDGKSSDYSQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHIFTYDNVYGSAGSPSYGLYDDCVAPLVEALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGTNDGVIPKVMEKIFKKVEAMKESTEFLIRVSFIEIFKEEVFDLLDASTCVNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGQGTSHDDTCDDILCAKLHLVDLAGSERAKRTGADGVRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKFAMIIESVRNGKSLDEIESNYDKDCELLKSYVSKIQELEGEVLRLQSFKSSKHSQYADLAESDDDRPQSGNILFPCSNEYSSEYDAKAVDISDGIEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQDYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRSWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAAATKRLKELLESRKAARETSSGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELSKLKEEELNRGSNLSDCTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERILGGRGRWHQVRSLADAKNIMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHENSALKRYSQGHNYDLRKQEHRNSVVIPADMDTSESDYANYSSDGDDDNYDWERSMKRRLNRKKTSKTKGRVSMVVPNGTDSTEFNLESSGDSILRENESTATTVVCCTCSKFSSCKTSKCQCRANGGACGSSCGCIPLKCSNRGSKSDRDASMQPDLFKDVRNGTENDETDEENHDLVSHGARLLQNALAERPSDAPPTAEDGGAKRKPLSDIGNTLVKSKANKANQRKKWRKSTIQLIPTPQQASSEPEKPEATEKTENEPNEVVNIPLKLPRAMRSAALNGGGNNLLRERNADHPEDSIGGNKGHELIVPKRVDEKENCNR* 1274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1902345 1910808 - Chy4G069260.1 Chy04g00208 224107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00208 1273 Coils Coil 379 399 - -
Chy04g00208 1273 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy04g00208 1273 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy04g00208 1273 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy04g00208 1273 PRINTS Kinesin heavy chain signature 220 237 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy04g00208 1273 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 8 1254 - -
Chy04g00208 1273 Pfam Kinesin motor domain 47 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy04g00208 1273 MobiDBLite consensus disorder prediction 1233 1273 - -
Chy04g00208 1273 Coils Coil 740 767 - -
Chy04g00208 1273 Coils Coil 555 586 - -
Chy04g00208 1273 Coils Coil 923 943 - -
Chy04g00208 1273 MobiDBLite consensus disorder prediction 1010 1036 - -
Chy04g00208 1273 CDD KISc_KIF4 14 365 - -
Chy04g00208 1273 SMART kinesin_4 12 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy04g00208 1273 Coils Coil 635 700 - -
Chy04g00208 1273 Coils Coil 794 821 - -
Chy04g00208 1273 Coils Coil 592 626 - -
Chy04g00208 1273 MobiDBLite consensus disorder prediction 1182 1199 - -
Chy04g00208 1273 MobiDBLite consensus disorder prediction 1141 1214 - -
Chy04g00208 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 398 IPR027417 -
Chy04g00208 1273 ProSiteProfiles Kinesin motor domain profile. 14 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy04g00208 1273 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Chy04g00208 1273 PANTHER KINESIN-LIKE PROTEIN KIN-4C 8 1254 - -
Chy04g00208 1273 MobiDBLite consensus disorder prediction 1241 1273 - -
Chy04g00208 1273 MobiDBLite consensus disorder prediction 1093 1127 - -
Chy04g00208 1273 Gene3D Kinesin motor domain 9 397 IPR036961 -
Chy04g00208 1273 MobiDBLite consensus disorder prediction 1020 1036 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00208 - - - csv:101205410 2345.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00208 Chy-Chr4:1902345 Chy12g00148 Chy-Chr12:1669469 4.59E-71 dispersed
Chy07g00151 Chy-Chr7:1286789 Chy04g00208 Chy-Chr4:1902345 0 transposed
Chy09g01040 Chy-Chr9:12894609 Chy04g00208 Chy-Chr4:1902345 1.51E-30 transposed
Chy11g01510 Chy-Chr11:21746748 Chy04g00208 Chy-Chr4:1902345 3.61E-47 transposed
Chy02g02294 Chy-Chr2:27001027 Chy04g00208 Chy-Chr4:1902345 2.56E-68 transposed
Chy03g01309 Chy-Chr3:16092408 Chy04g00208 Chy-Chr4:1902345 1.52E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g516 . . . . . . . Bma01g02586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00208 . . . . . . . . . . . . . . . . . . Bhi09g02497 . . . . Mch11g0708 . . . . . . . . . . . Cme04g00238
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00208 Chy_Chr04 FPKM 5.393898 5.352483 6.21735 5.20139 7.908188 9.715842 8.476369 12.371299 11.14572 11.133308