Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00215 ATGGCTTGCAAGTTCTTGTTTCCTCCTTTACTAGCTTCATTTCTTATACTCTTAACCCTTTTCACCTCTTCATTTGCTTCAGATGATTCTCTCACTACTTTTTTCCCTACCAAAGCCATTTGCAAATTGACCTCAAATCCTTCTTACTGCATCACTGTGCTTAAACAATCCAGAGATGGTAATATCTACGATTCTGGCCGGTTCTCGATTCGTCGTTCTTTATCTAAAGCCACTAGATTCCTTGACTTGATTGAGAAGCATCTTCAGAACTCTTCAACTCTACCAAATTCAATCATCGGAGCTCTTAAAGATTGTCAGTACCTTGCTCAACTGAATATGAATTTCTTGTCTAATTCGTTTCGAGCTGTTAATGGCACTGATAGAAAGCTAACTTACTCAAAAGCTGATTATATCCAGAGTCTTCTTAGTGCCATCTTAACCAACATTGATACTTGTCTTGATGGTCTAAACACTGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTATTAGCCCCACTTATTGATTGTACCAAATCATACAGTCTTTCCCTTGATCTTTTTACAAAGGGTTGGGTGCCTAGGAGGAATAGAAACAGAACACTTGAGCACCCTGGGAAAAAACACCTGCAGTTTAGGAAAGGACCGTTGCCGTTGAGAATGTCGAGACACGACCGTGCTGTTTACAACTCGGTGGCAAATCGGAGAAAGCTTTTGTCTTCCTCAGATGGAGTTTTGGTTAATGGTGTTGTAGTTGTGAGTCAAGATGGTCATGGAGACTTCCTTAACATAACGGATGCTATTAATGCAGCTCCAAACAACTCTCTTGCTTCCGATGGCTACTTCTTGATTTACATTATGGCTGGTGTTTATCAAGAGTATGTGTCTGTTCCTTCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAAACTATTATCACAGGCAACCGGAGCGTCGCTGACGGATGGACGACTTTCAACAGTGCAACTTTCGCTGTAGCAGCAGAAGGATTCATGGCAGTAAACATAACCATCCAAAACACAGCTGGAGCAATCAAAGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGATATGTGTGTTTTTTACTCCTGCAGTTTTGAAGGCTATCAAGACACCTTATACACTCATTCCCTCAGGCAATTCTTTAGAGAATGTGACATTTATGGCACTGTTGACTTCATTTTTGGAAATGCTGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTCCCCAGTCCCGGTCAGGCCAACATGATCACCGCCCAAGGCCGATCCGATCCTAACCAAAACACCGGGACTTCGATCCACAACTGCTCCATCCGAGCCACCCCCGAGTTGGCTGCAAGTACTAGCTATATGAACAAGACATATTTGGGAAGGCCATGGAAACAATACTCAAGAACAGTGTATATGCAAACATTTATTGATGGATTTGTAAATCCTAAAGGTTGGGATCCATGGACAGGACAATATTTGAGCACATTATATTATGGAGAGTATAATGATACAGGAGGTGGATCAGATACAAAGAACAGAGTTACTTGGGCAGGTTATCATGTGATTAATAATGCAACCGATGCTGCTAATTTTACAATTTCAAACTTCTTGGTTGGGGATGCGTGGTTGCCTCCAACTTGGGTGCCTTACACGGGAGGGTTCGTATAA 1695 41.89 MACKFLFPPLLASFLILLTLFTSSFASDDSLTTFFPTKAICKLTSNPSYCITVLKQSRDGNIYDSGRFSIRRSLSKATRFLDLIEKHLQNSSTLPNSIIGALKDCQYLAQLNMNFLSNSFRAVNGTDRKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRRNRNRTLEHPGKKHLQFRKGPLPLRMSRHDRAVYNSVANRRKLLSSSDGVLVNGVVVVSQDGHGDFLNITDAINAAPNNSLASDGYFLIYIMAGVYQEYVSVPSKKKYLLMIGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITIQNTAGAIKGQAVALRSGADMCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPSPGQANMITAQGRSDPNQNTGTSIHNCSIRATPELAASTSYMNKTYLGRPWKQYSRTVYMQTFIDGFVNPKGWDPWTGQYLSTLYYGEYNDTGGGSDTKNRVTWAGYHVINNATDAANFTISNFLVGDAWLPPTWVPYTGGFV* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1957479 1960485 + Chy4G069330.1 Chy04g00215 224114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00215 564 PANTHER PECTINESTERASE 15 562 - -
Chy04g00215 564 Pfam Pectinesterase 250 549 IPR000070 GO:0030599|GO:0042545
Chy04g00215 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 160 IPR006501 GO:0004857
Chy04g00215 564 Gene3D - 245 563 IPR012334 -
Chy04g00215 564 PANTHER PECTINESTERASE 15 562 - -
Chy04g00215 564 CDD PMEI-like_3 39 191 - -
Chy04g00215 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 189 IPR035513 -
Chy04g00215 564 SMART PMEI_2 30 186 IPR006501 GO:0004857
Chy04g00215 564 SUPERFAMILY Pectin lyase-like 246 561 IPR011050 -
Chy04g00215 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 189 IPR035513 -
Chy04g00215 564 Pfam Plant invertase/pectin methylesterase inhibitor 38 166 IPR006501 GO:0004857
Chy04g00215 564 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01720 Chy-Chr1:23000741 Chy04g00215 Chy-Chr4:1957479 3.13E-97 dispersed
Chy04g00215 Chy-Chr4:1957479 Chy11g00104 Chy-Chr11:1190301 0 dispersed
Chy09g00686 Chy-Chr9:9034791 Chy04g00215 Chy-Chr4:1957479 9.82E-94 dispersed
Chy04g00215 Chy-Chr4:1957479 Chy10g01212 Chy-Chr10:16839372 5.41E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00215 K01051 - csv:101205879 1079.32