Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00217 ATGTCGGGCGCCTGGGATGAACACACTGTTACCGACTCCGATCGACAACCCGACTCCGATCATCAATATTCCCACTTCAATTTCGATTTCTTCTCCGCCATTGTTAAACCCAAGGATTACTACAAAATTTTGGAGGTAGAATACGATGCTACCGACGATGACATTCGTTCCAATTACATACGACTTGCTTTGAAATGGCATCCTGATAAGCAGAAAGATAAAGACGGTGCCACTTCCAGATTTCAGGACATAAACGAGGCTTATCAAGTTTTAAGCGATCCTTCGAGAAGGCAGGAATACGACGAGAAAGGGATGCTTTATATAAATGATGATAACATAGTGGATTACCTCAAGCGGTACAAAAGCCTTATTTTGACATGTAATGGCCTTGGTATGAAGTATTCAATTTGGTGA 414 41.79 MSGAWDEHTVTDSDRQPDSDHQYSHFNFDFFSAIVKPKDYYKILEVEYDATDDDIRSNYIRLALKWHPDKQKDKDGATSRFQDINEAYQVLSDPSRRQEYDEKGMLYINDDNIVDYLKRYKSLILTCNGLGMKYSIW* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1978907 1981932 + Chy4G069350.1 Chy04g00217 224116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00217 137 ProSiteProfiles dnaJ domain profile. 39 104 IPR001623 -
Chy04g00217 137 PRINTS DnaJ domain signature 59 74 IPR001623 -
Chy04g00217 137 PRINTS DnaJ domain signature 76 96 IPR001623 -
Chy04g00217 137 PRINTS DnaJ domain signature 41 59 IPR001623 -
Chy04g00217 137 PRINTS DnaJ domain signature 96 115 IPR001623 -
Chy04g00217 137 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 10 137 - -
Chy04g00217 137 CDD DnaJ 39 93 IPR001623 -
Chy04g00217 137 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Chy04g00217 137 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 10 137 - -
Chy04g00217 137 SMART dnaj_3 38 96 IPR001623 -
Chy04g00217 137 SUPERFAMILY Chaperone J-domain 34 121 IPR036869 -
Chy04g00217 137 Pfam DnaJ domain 39 101 IPR001623 -
Chy04g00217 137 Gene3D DnaJ domain 32 120 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00217 - - - csv:101206591 286.574
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00217 Chy-Chr4:1978907 Chy01g00472 Chy-Chr1:3420535 6.51E-19 dispersed
Chy06g01141 Chy-Chr6:9969714 Chy04g00217 Chy-Chr4:1978907 1.20E-09 dispersed
Chy07g00444 Chy-Chr7:3402014 Chy04g00217 Chy-Chr4:1978907 1.80E-14 transposed
Chy03g01336 Chy-Chr3:16323090 Chy04g00217 Chy-Chr4:1978907 2.41E-15 wgd
Chy03g01293 Chy-Chr3:15940459 Chy04g00217 Chy-Chr4:1978907 1.62E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g487 . . . . . . . . . Cmo12g00144 Cma01g01638 . . Car12g00169 . . Cpe07g00157 . . . . . . . . . . . . . . . . . . Lsi04g02272 Csa03g04483 Chy04g00217 . . . . . . . . Bma02g00106 Sed13g1547 Cmo01g01685 . Cma12g00186 . . . . . Bhi09g02487 Tan01g3840 Cmetu04g2532 . Hepe01g2162 Mch11g0701 . Cla11g01415 Cam11g1472 Cec11g1502 Cco11g1497 Clacu11g1633 Cmu11g1451 Cre11g1869 . . . Cme04g00245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002065 3 2 1 1 2 1 3 2 2 2 2 1 3 2 1 3 1 4 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00217 Chy_Chr04 FPKM 2.247549 2.179135 10.670686 10.456247 3.907517 4.650749 3.870125 42.347752 42.435089 45.553272