Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00245 ATGGCGGTCACCTCTTCCCCTCGCGAGGAGTATGTTTACATGGCTAAGCTTGCCGAGCAAGCTGAGCGTTACGAGGAGATGGTCGAGTTTATGGAGAAGGTCTCCGCCGCTACAGATAACGAGGAACTCACCGTTGAGGAGCGGAATCTTCTTTCTGTTGCTTACAAGAATGTTATTGGAGCACGTAGAGCTTCTTGGAGGATTATTTCCTCCATTGAACAGAAAGAAGAGAGCCGAGGGAATGATGATCATGTCTCTGTCATCCGTGGTTACAGATCCAAGATCGAGACTGAGCTTTCTAACATTTGTGATGGCATCCTTAAACTTCTTGACTCTCGTCTTATTTCCTCTGCTGCTTCTGGTGATTCCAAGGTTTTTTATCTTAAGATGAAGGGCGATTATCATAGATACCTTGCTGAATTTAAGACCGGAGCTGAAAGGAAGGAAGCTGCCGAAAGTACTCTCACTGCTTATAAATCTGCTCAGGATATTGCAAATTCTGAACTTGCTCCTACTCACCCTATACGACTTGGGCTGGCTTTGAACTTCTCAGTGTTCTATTATGAGATTCTGAATTCCCCTGATCGCGCTTGCAGCCTTGCTAAACAGGCTTTCGATGAAGCAATCGCTGAGTTGGATACACTGGGCGAGGAATCATACAAAGATAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACCCTATGGACTTCAGACATGCAGGACGATGGAGATGAGATTAAAGAAGCAGCTCCCAAACGCGATGATGAATAG 777 45.56 MAVTSSPREEYVYMAKLAEQAERYEEMVEFMEKVSAATDNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRGYRSKIETELSNICDGILKLLDSRLISSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANSELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDEIKEAAPKRDDE* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2195752 2197683 - Chy4G069630.1 Chy04g00245 224144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00245 258 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 4 253 - -
Chy04g00245 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Chy04g00245 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Chy04g00245 258 PANTHER 14-3-3 PROTEIN 4 253 IPR000308 -
Chy04g00245 258 PIRSF 14-3-3 2 250 IPR000308 -
Chy04g00245 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Chy04g00245 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Chy04g00245 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Chy04g00245 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Chy04g00245 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Chy04g00245 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Chy04g00245 258 Coils Coil 14 34 - -
Chy04g00245 258 Pfam 14-3-3 protein 14 238 IPR023410 -
Chy04g00245 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Chy04g00245 258 Gene3D - 1 252 IPR036815 -
Chy04g00245 258 SMART 1433_4 8 250 IPR023410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00245 K06630 YWHAE; 14-3-3 protein epsilon - csv:101210822 499.204
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01354 Chy04g00245 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00220 Chy-Chr4:1986377 Chy04g00245 Chy-Chr4:2195752 7.66E-134 dispersed
Chy04g00245 Chy-Chr4:2195752 Chy07g00921 Chy-Chr7:13090532 1.41E-159 dispersed
Chy03g01292 Chy-Chr3:15935736 Chy04g00245 Chy-Chr4:2195752 4.76E-20 transposed
Chy03g01354 Chy-Chr3:16443954 Chy04g00245 Chy-Chr4:2195752 2.08E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g442 . . Bda01g00893 Bda03g00486 . Bpe04g00439 . . Cmo05g00534 Cmo12g00129 Cma01g01616 Cma09g00568 Car01g01232 Car12g00154 Sed04g0158 Cpe06g00431 Cpe07g00142 Bhi04g00777 Tan02g2410 Cmetu03g2141 . Hepe10g0481 . Lcy13g1545 Cla08g01123 Cam08g1580 Cec08g1150 Cco08g1276 Clacu08g1281 . Cre08g1063 . . . . Lsi04g02246 Csa03g04457 Chy04g00245 Cme03g01852 Blo17g00112 Blo18g00127 . Bda13g01393 Bpe02g01128 Bpe14g00462 Bma01g01396 Bma02g00132 Sed05g1594 Cmo01g01661 Cmo09g00555 Cma12g00167 Cma05g00507 Car05g00457 Car09g00495 Cpe11g00447 Cpe02g00365 Bhi09g02451 Tan01g3801 Cmetu04g2791 . Hepe01g2137 Mch11g0676 . Cla11g01392 Cam11g1448 Cec11g1476 Cco11g1473 Clacu11g1607 Cmu11g1426 Cre11g1846 Lsi08g00980 Csa02g02163 Chy03g01354 Cme04g00274
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00245 CCT 5 242 14-3-3 family AT4G09000 90.8 3.1e-118 421.8
Chy03g01354 CCT 4 261 14-3-3 family AT4G09000 84.1 1.9e-115 412.5
Chy07g00921 . 4 241 14-3-3 family AT4G09000 87.0 2.3e-113 405.6
Chy04g00220 . 11 256 14-3-3 family AT4G09000 72.8 3.9e-97 351.7
Chy01g00337 . 7 238 14-3-3 family AT4G09000 73.1 2.0e-93 339.3
Chy03g01292 . 10 299 14-3-3 family AT4G09000 61.4 3.2e-91 332.0
Chy10g01053 . 4 245 14-3-3 family AT4G09000 70.9 1.0e-89 327.0
Chy03g00712 . 105 318 14-3-3 family AT4G09000 71.8 1.2e-82 303.5
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT4G09000 66.0 2.1e-82 302.8
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT4G09000 76.5 3.7e-47 185.7
Chy04g00245 CCT 5 258 14-3-3 family AT1G78300 90.2 2.0e-123 438.7
Chy03g01354 CCT 6 281 14-3-3 family AT1G78300 84.1 3.2e-121 431.4
Chy07g00921 . 6 253 14-3-3 family AT1G78300 87.1 3.6e-117 417.9
Chy04g00220 . 11 257 14-3-3 family AT1G78300 73.3 6.5e-98 354.0
Chy01g00337 . 7 247 14-3-3 family AT1G78300 71.2 5.7e-94 340.9
Chy03g01292 . 11 300 14-3-3 family AT1G78300 62.1 1.4e-92 336.3
Chy10g01053 . 8 269 14-3-3 family AT1G78300 68.2 1.3e-90 329.7
Chy03g00712 . 105 336 14-3-3 family AT1G78300 69.2 1.1e-84 310.1
Chy04g00255 CCT,ECH 1 262 14-3-3 family AT1G78300 63.3 2.6e-83 305.4
Chy03g01367 CCT,ECH 10 142 14-3-3 family AT1G78300 70.7 4.2e-49 191.8
Chy07g00921 . 6 259 14-3-3 family AT5G38480 90.2 1.5e-123 439.1
Chy04g00245 CCT 6 252 14-3-3 family AT5G38480 85.0 1.1e-113 406.4
Chy03g01354 CCT 6 271 14-3-3 family AT5G38480 79.7 2.9e-111 398.3
Chy04g00220 . 10 261 14-3-3 family AT5G38480 71.0 2.9e-95 345.1
Chy01g00337 . 7 247 14-3-3 family AT5G38480 72.0 1.0e-92 336.7
Chy10g01053 . 8 261 14-3-3 family AT5G38480 71.5 6.8e-92 334.0
Chy03g01292 . 10 304 14-3-3 family AT5G38480 61.4 1.7e-90 329.3
Chy03g00712 . 105 334 14-3-3 family AT5G38480 70.7 1.8e-84 309.3
Chy04g00255 CCT,ECH 5 267 14-3-3 family AT5G38480 64.5 2.2e-82 302.4
Chy03g01367 CCT,ECH 8 139 14-3-3 family AT5G38480 72.0 2.7e-48 189.1
Chy03g01366 . 152 272 14-3-3 family AT5G38480 67.5 3.7e-37 152.1
Chy04g00245 CCT 4 242 14-3-3 family AT1G35160 89.1 3.2e-117 418.3
Chy03g01354 CCT 3 261 14-3-3 family AT1G35160 83.4 3.9e-115 411.4
Chy07g00921 . 3 240 14-3-3 family AT1G35160 86.6 2.4e-112 402.1
Chy04g00220 . 1 256 14-3-3 family AT1G35160 72.3 5.1e-99 357.8
Chy01g00337 . 2 237 14-3-3 family AT1G35160 71.0 3.5e-92 335.1
Chy03g01292 . 1 299 14-3-3 family AT1G35160 60.9 2.3e-91 332.4
Chy10g01053 . 8 245 14-3-3 family AT1G35160 71.7 1.3e-89 326.6
Chy03g00712 . 105 318 14-3-3 family AT1G35160 71.8 5.1e-83 304.7
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT1G35160 66.0 2.5e-82 302.4
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT1G35160 74.8 1.7e-46 183.3
Chy03g01366 . 146 272 14-3-3 family AT1G35160 60.5 1.2e-36 150.6
Chy07g00921 . 4 254 14-3-3 family AT5G16050 86.5 7.6e-118 420.2
Chy04g00245 CCT 4 251 14-3-3 family AT5G16050 79.1 2.5e-105 378.6
Chy03g01354 CCT 3 272 14-3-3 family AT5G16050 73.7 3.3e-105 378.3
Chy04g00220 . 10 258 14-3-3 family AT5G16050 67.9 6.7e-90 327.4
Chy03g01292 . 10 301 14-3-3 family AT5G16050 58.6 1.7e-85 312.8
Chy01g00337 . 1 246 14-3-3 family AT5G16050 65.1 2.5e-84 308.9
Chy10g01053 . 3 252 14-3-3 family AT5G16050 63.9 6.1e-83 304.3
Chy03g00712 . 119 325 14-3-3 family AT5G16050 72.5 8.8e-82 300.4
Chy04g00255 CCT,ECH 5 261 14-3-3 family AT5G16050 61.5 3.8e-77 285.0
Chy03g01367 CCT,ECH 7 139 14-3-3 family AT5G16050 73.7 4.4e-49 191.8
Chy04g00220 . 9 256 14-3-3 family AT5G10450 81.9 8.6e-109 390.2
Chy03g01292 . 9 299 14-3-3 family AT5G10450 71.8 4.7e-107 384.4
Chy04g00245 CCT 1 242 14-3-3 family AT5G10450 79.0 6.3e-104 374.0
Chy07g00921 . 4 259 14-3-3 family AT5G10450 73.9 1.1e-103 373.2
Chy03g01354 CCT 3 270 14-3-3 family AT5G10450 71.4 5.0e-101 364.4
Chy01g00337 . 1 238 14-3-3 family AT5G10450 68.0 1.7e-88 322.8
Chy10g01053 . 3 245 14-3-3 family AT5G10450 65.0 4.7e-83 304.7
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT5G10450 61.4 4.6e-78 288.1
Chy03g00712 . 119 318 14-3-3 family AT5G10450 68.0 6.2e-75 277.7
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT5G10450 72.3 1.5e-44 176.8
Chy07g00921 . 6 260 14-3-3 family AT3G02520 93.0 1.2e-128 456.1
Chy04g00245 CCT 5 258 14-3-3 family AT3G02520 84.4 2.4e-116 415.2
Chy03g01354 CCT 6 271 14-3-3 family AT3G02520 80.9 2.3e-114 408.7
Chy04g00220 . 10 258 14-3-3 family AT3G02520 72.3 2.5e-97 352.1
Chy03g01292 . 10 301 14-3-3 family AT3G02520 62.3 6.4e-93 337.4
Chy10g01053 . 8 262 14-3-3 family AT3G02520 67.7 2.1e-91 332.4
Chy01g00337 . 1 238 14-3-3 family AT3G02520 71.3 6.0e-91 330.9
Chy03g00712 . 105 336 14-3-3 family AT3G02520 68.3 2.9e-85 312.0
Chy04g00255 CCT,ECH 1 260 14-3-3 family AT3G02520 64.9 1.6e-83 306.2
Chy03g01367 CCT,ECH 7 141 14-3-3 family AT3G02520 72.1 5.7e-49 191.4
Chy03g01366 . 148 272 14-3-3 family AT3G02520 63.8 2.2e-37 152.9
Chy04g00220 . 9 256 14-3-3 family AT5G65430 81.5 9.6e-110 393.3
Chy03g01292 . 9 299 14-3-3 family AT5G65430 72.9 1.1e-108 389.8
Chy04g00245 CCT 1 242 14-3-3 family AT5G65430 79.8 2.1e-104 375.6
Chy07g00921 . 7 241 14-3-3 family AT5G65430 79.7 4.6e-104 374.4
Chy03g01354 CCT 8 261 14-3-3 family AT5G65430 74.5 2.4e-100 362.1
Chy01g00337 . 1 238 14-3-3 family AT5G65430 69.7 6.5e-90 327.4
Chy10g01053 . 8 245 14-3-3 family AT5G65430 68.5 2.8e-85 312.0
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT5G65430 62.9 2.3e-79 292.4
Chy03g00712 . 119 318 14-3-3 family AT5G65430 70.5 1.8e-76 282.7
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT5G65430 73.9 3.7e-45 178.7
Chy01g00337 . 1 266 14-3-3 family AT2G42590 81.3 1.9e-119 425.6
Chy10g01053 . 6 281 14-3-3 family AT2G42590 70.6 1.6e-102 369.4
Chy04g00255 CCT,ECH 3 264 14-3-3 family AT2G42590 69.1 8.4e-96 347.1
Chy03g00712 . 105 332 14-3-3 family AT2G42590 75.0 1.8e-93 339.3
Chy07g00921 . 8 248 14-3-3 family AT2G42590 73.0 9.6e-92 333.6
Chy04g00245 CCT 8 245 14-3-3 family AT2G42590 70.6 2.6e-89 325.5
Chy03g01354 CCT 8 267 14-3-3 family AT2G42590 65.4 8.4e-88 320.5
Chy04g00220 . 11 258 14-3-3 family AT2G42590 62.5 1.1e-79 293.5
Chy03g01292 . 11 301 14-3-3 family AT2G42590 53.3 2.4e-74 275.8
Chy03g01367 CCT,ECH 10 134 14-3-3 family AT2G42590 80.0 6.7e-53 204.5
Chy03g01366 . 150 272 14-3-3 family AT2G42590 71.5 4.4e-44 175.3
Chy01g00337 . 6 242 14-3-3 family AT1G22300 78.1 6.5e-103 370.5
Chy10g01053 . 5 250 14-3-3 family AT1G22300 76.0 1.0e-100 363.2
Chy04g00255 CCT,ECH 1 260 14-3-3 family AT1G22300 70.4 1.6e-93 339.3
Chy03g00712 . 105 323 14-3-3 family AT1G22300 76.7 1.0e-92 336.7
Chy07g00921 . 5 246 14-3-3 family AT1G22300 70.7 3.3e-91 331.6
Chy04g00245 CCT 8 245 14-3-3 family AT1G22300 69.3 1.0e-87 320.1
Chy03g01354 CCT 8 265 14-3-3 family AT1G22300 65.4 9.4e-86 313.5
Chy04g00220 . 11 258 14-3-3 family AT1G22300 62.4 4.2e-78 288.1
Chy03g01292 . 11 301 14-3-3 family AT1G22300 53.3 2.0e-72 269.2
Chy03g01366 . 148 272 14-3-3 family AT1G22300 79.2 1.2e-48 190.3
Chy03g01367 CCT,ECH 10 133 14-3-3 family AT1G22300 77.4 1.2e-48 190.3
Chy01g00337 . 6 246 14-3-3 family AT1G34760 80.5 4.1e-105 377.9
Chy10g01053 . 5 251 14-3-3 family AT1G34760 79.8 2.2e-103 372.1
Chy03g00712 . 105 326 14-3-3 family AT1G34760 79.3 2.2e-95 345.5
Chy04g00255 CCT,ECH 1 263 14-3-3 family AT1G34760 71.5 2.1e-93 339.0
Chy07g00921 . 5 250 14-3-3 family AT1G34760 71.1 1.1e-89 326.6
Chy04g00245 CCT 8 249 14-3-3 family AT1G34760 69.4 7.7e-88 320.5
Chy03g01354 CCT 8 264 14-3-3 family AT1G34760 67.3 5.5e-86 314.3
Chy04g00220 . 11 257 14-3-3 family AT1G34760 61.1 1.4e-76 283.1
Chy03g01292 . 11 300 14-3-3 family AT1G34760 52.4 8.5e-71 263.8
Chy03g01367 CCT,ECH 8 137 14-3-3 family AT1G34760 81.5 6.8e-52 201.1
Chy03g01366 . 148 272 14-3-3 family AT1G34760 76.0 6.6e-47 184.5
Chy10g01053 . 2 269 14-3-3 family AT1G26480 83.3 2.2e-117 418.7
Chy03g00712 . 105 333 14-3-3 family AT1G26480 86.9 3.2e-108 388.3
Chy01g00337 . 3 242 14-3-3 family AT1G26480 80.0 4.6e-107 384.4
Chy04g00255 CCT,ECH 3 261 14-3-3 family AT1G26480 71.0 3.4e-94 341.7
Chy04g00245 CCT 8 247 14-3-3 family AT1G26480 74.2 1.1e-92 336.7
Chy07g00921 . 2 256 14-3-3 family AT1G26480 71.6 9.3e-92 333.6
Chy03g01354 CCT 8 279 14-3-3 family AT1G26480 67.0 1.5e-89 326.2
Chy04g00220 . 11 254 14-3-3 family AT1G26480 64.3 3.1e-79 292.0
Chy03g01292 . 11 297 14-3-3 family AT1G26480 54.4 1.5e-73 273.1
Chy03g01367 CCT,ECH 13 141 14-3-3 family AT1G26480 76.0 1.2e-49 193.7
Chy03g01366 . 149 272 14-3-3 family AT1G26480 75.0 2.4e-47 186.0
Chy01g00337 . 6 236 14-3-3 family AT1G78220 50.9 3.7e-63 238.4
Chy10g01053 . 5 243 14-3-3 family AT1G78220 51.3 1.4e-62 236.5
Chy03g00712 . 105 316 14-3-3 family AT1G78220 50.2 1.3e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000486 6 4 5 6 5 2 5 3 3 3 3 3 6 3 2 6 3 6 6 3 3 3 3 3 3 3 3 6 4 0 114
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00245 Chy_Chr04 FPKM 0.0 0.0 0.0 0.172298 20.633286 21.386322 19.119619 0.0 0.0 0.0