Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00253 ATGGCGAAATTCAATTGCTTCTCTGGCCGGACAGGGAAGAAGAAGAAAACCAAGAGTGATTTGGAATCGCAAAAACCTGCTGAATTGAATTACTTGAAGAAAACTTTGCAAGTCAGCATCCATCATTCTGAGGAGCCTTTTCAAGTTGGAGAAGGGAAATCGTCGACACTAGACGTTGCAATTCTGTACCCATCTGAGAATAATTCGAAGCTCGATGTTAAGGTGACGAACCATGAGAGTCCTACAGTAGGAGGAGCAGTAGAAGCTGAATATGAAGGAGAGGATGAGCGCGATGACAACTCTATCAAGCGGAATCCTTCCGACTTTGATCTCCCTGCGCAAGACAACTGTGGAGGAGAATTTGAGTTTCAATTATTGGGAAACCATTTTGATAAGATCACTACTGAAGGTGAAGGTGGTGAAGGAATAGGAGTAGAACGAGAAGGGGTTGATGCGTCGATCCAAAATGGGAATCTTAGTGATCCTGGAATTGGTAAGGCAGTATGTTGGGCATCGCCTAAACTTAAACGCTCCTGCTCTAATCTTGAAACCAGGGATGTGCTTAGAGATTTATCTCATCAGTTGCCTCCTCCAAAGTCTCAGTCTTTCGAAAAATTGCAAGAATTGGCGAACGAAATGAGGTACTATGTCGATCCAGGCAGTCCAGGGTCTACTATGACCCATCGCAGTGCTGATAAAGTCATGTTGAAGAAGCGTTCTTCAAGCCAGATTCTTCCTTCAAGAAGTAGAAGGTTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTGCAAAAGCCGTGGACTATCAAGGCTACTCCCACCAGCTCTGTTTTCAACCAGCAAGGTGGGTATTGCTCTGACAATCTTGAGCCGAACAGAGCAACCGGGAAAAGTATGATTGAATCACCTGGATCATTTACTGAGGAATCCTGGACCAACGGCCCGTGTAACAACAAAAGCGATGATCAGGATCAGGAGAAATTGTGCAATGGAGTCTCTGGTTTGTGGCCACAAAATCAGTGGGTTGCGTTTTCAGCAGAATCATCTTCGCTTAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAAATCGAACCATGTATTACAATCGACGAGGTTGGAGGTGACAATGATGAAGCTACCGTCTTCCCACCCTCTCCTGAGAGAACTTCAACTCACACGCCCCGACGTGGGGAAACCAATCTGACAGAAGAGATTTTGTATGCCAATAGTGTCATCCAGTCATTGAATTCTTCGTCAACCGTGGCTCACATCTCTGGTATTGGCTTAAGAGCCATACCCACAATCTCACACCTATCCGGTCTTAGATCAGTCAATTTGTCCGGCAACCTCATACTTCACATTAACCCTGGATCACTGCCCAAGGGACTGCACACTCTCAATTTGTCCAGGAACAAGATCAGTGTCATTGAAGGGCTCAAAGAATTAACACGACTTCGGATACTGGATCTGAGTTACAATCGCATATCTCGTATAGGACATGGGTTGTCAAACTGTACGATTATCAAGGAACTCTATCTTGCTGGCAACAAGATTAGTGATGTTGAGGGACTGCATCGAATCTTGAAGCTGACAGTTCTCGACCTAAGCTTTAACAAGATTTCAACCACCAAATCCCTGGGCCAACTTGTTGCTAACTATAACACTCTTCAAGCTCTTAATCTGTTGGGGAATCCAATTCAAAGTAATGTGAGCGACGACCAGCTACGCAAGGCAGTTACTGGCCTTCTTCCAAACCTTGTTTATCTAAACAAGCAAGCCATCAAAGCACAGAGAGCTCGAGAAGTTGCAACTGATAGCATTGCCAAAGCTGCACTAGGGAACAGTAGTTGGAGTTCTCGTAGAAGAACATCAAGGAAAACAAGCCATATACCATCGTCTTCCATTAGTGGGCACAGAAGCTCTGCAAGCTTTGTACACAAAGGCAGGCACAGATCAAAAGCGCAAACCGTTCGCCATTCTTCTCTAAGGATGTCATCATCGGCTCTTGCCTCAACAACTCGTTAG 2028 45.22 MAKFNCFSGRTGKKKKTKSDLESQKPAELNYLKKTLQVSIHHSEEPFQVGEGKSSTLDVAILYPSENNSKLDVKVTNHESPTVGGAVEAEYEGEDERDDNSIKRNPSDFDLPAQDNCGGEFEFQLLGNHFDKITTEGEGGEGIGVEREGVDASIQNGNLSDPGIGKAVCWASPKLKRSCSNLETRDVLRDLSHQLPPPKSQSFEKLQELANEMRYYVDPGSPGSTMTHRSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTIKATPTSSVFNQQGGYCSDNLEPNRATGKSMIESPGSFTEESWTNGPCNNKSDDQDQEKLCNGVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIEPCITIDEVGGDNDEATVFPPSPERTSTHTPRRGETNLTEEILYANSVIQSLNSSSTVAHISGIGLRAIPTISHLSGLRSVNLSGNLILHINPGSLPKGLHTLNLSRNKISVIEGLKELTRLRILDLSYNRISRIGHGLSNCTIIKELYLAGNKISDVEGLHRILKLTVLDLSFNKISTTKSLGQLVANYNTLQALNLLGNPIQSNVSDDQLRKAVTGLLPNLVYLNKQAIKAQRAREVATDSIAKAALGNSSWSSRRRTSRKTSHIPSSSISGHRSSASFVHKGRHRSKAQTVRHSSLRMSSSALASTTR* 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2254702 2257045 - Chy4G069710.1 Chy04g00253 224152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00253 675 Pfam Leucine rich repeat 463 519 IPR001611 GO:0005515
Chy04g00253 675 Gene3D Ribonuclease Inhibitor 382 503 IPR032675 -
Chy04g00253 675 MobiDBLite consensus disorder prediction 644 658 - -
Chy04g00253 675 MobiDBLite consensus disorder prediction 615 675 - -
Chy04g00253 675 MobiDBLite consensus disorder prediction 659 675 - -
Chy04g00253 675 SUPERFAMILY Outer arm dynein light chain 1 432 595 - -
Chy04g00253 675 MobiDBLite consensus disorder prediction 305 325 - -
Chy04g00253 675 Pfam Leucine Rich repeat 530 542 IPR001611 GO:0005515
Chy04g00253 675 PANTHER NISCHARIN RELATED 3 660 - -
Chy04g00253 675 Gene3D Ribonuclease Inhibitor 504 600 IPR032675 -
Chy04g00253 675 MobiDBLite consensus disorder prediction 375 397 - -
Chy04g00253 675 SMART LRR_sd22_2 461 482 - -
Chy04g00253 675 SMART LRR_sd22_2 528 549 - -
Chy04g00253 675 SMART LRR_sd22_2 506 527 - -
Chy04g00253 675 SMART LRR_sd22_2 483 505 - -
Chy04g00253 675 SMART LRR_typ_2 439 462 IPR003591 -
Chy04g00253 675 SMART LRR_typ_2 483 506 IPR003591 -
Chy04g00253 675 MobiDBLite consensus disorder prediction 305 320 - -
Chy04g00253 675 MobiDBLite consensus disorder prediction 1 26 - -
Chy04g00253 675 ProSiteProfiles Leucine-rich repeat profile. 530 551 IPR001611 GO:0005515
Chy04g00253 675 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 660 - -
Chy04g00253 675 ProSiteProfiles Leucine-rich repeat profile. 485 507 IPR001611 GO:0005515
Chy04g00253 675 ProSiteProfiles Leucine-rich repeat profile. 463 484 IPR001611 GO:0005515
Chy04g00253 675 MobiDBLite consensus disorder prediction 78 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00253 - - - csv:101212929 1231.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00391 Chy-Chr1:2791168 Chy04g00253 Chy-Chr4:2254702 3.20E-65 dispersed
Chy02g02296 Chy-Chr2:27018925 Chy04g00253 Chy-Chr4:2254702 1.97E-08 dispersed
Chy04g00253 Chy-Chr4:2254702 Chy05g01391 Chy-Chr5:17979018 2.62E-07 dispersed
Chy04g00253 Chy-Chr4:2254702 Chy12g00669 Chy-Chr12:9711245 1.06E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00253 Chy_Chr04 FPKM 0.787929 1.133225 0.279684 0.412527 1.86349 1.278552 1.676542 0.047103 0.159674 0.0