Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00255 ATGGCGAAAGAGAGAGAACTACTCGTTTACTCTGCTAAATTGGCTGAACAAGCTGAGAGATATGAAGGCATGATATTTTTGAATCATTATTGCCTTTTCCATGCTTCAGAGATGGTTGAGGAAATGAAGAAAATTACGAAGTTAAATGTGGAATTGACAGTGGAAGAGAGAAATCTGCTATCTGTTGGCTATAAGAATGTAATAGGAGCTAGACGAGCTTCCTGGCGTATTTTGTCTTCAATTGAACAGAAGGAAACTACCAAACATAATGAGAAGAACGTGGAGCGGATAATTGGTTACAGGCATGGGGTTGAAGATGAGCTCTCTAAAATATGCAGTGATATATTGTCAATCATTGACCAGCATCTCCTTCCATGTTCCTCAGCTGGAGAATCTACTGTGTTCTACCATAAGATGAAAGGAGACTACTGTCGGTATTTGGCTGAGTTTAAATCCGGTGATGAGCATAAACAAGTTGCGGATCAGTCATTAAAGTCTTACGAGGCAAGTTTATTTCCTGCTGCTTCTGCAATTGCTAACTCTGATTTGTCTCCAACTCATCCTATAAGACTTGGCTTGGCTCTGAACTTCTCTGTTTTCTACTACGAGATATTGAATTCCCCTGAAAGGGCCTGCCACCTTGCTAAGCAGGCCTTTGATGAGGCTATTGCAGAACTTGACAGTCTCAATGAGGAATCCTACAAGGACATTACCCTTATTATGCAGCTCCTTAGGGACAATCTAACTCTGTGGACATCCGATCTTGCAGACGAAGGTGGAGAGCAGTCCAATGCCGATGAACTTTAG 807 41.76 MAKERELLVYSAKLAEQAERYEGMIFLNHYCLFHASEMVEEMKKITKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIGYRHGVEDELSKICSDILSIIDQHLLPCSSAGESTVFYHKMKGDYCRYLAEFKSGDEHKQVADQSLKSYEASLFPAASAIANSDLSPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDITLIMQLLRDNLTLWTSDLADEGGEQSNADEL* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2267948 2270572 + Chy4G069730.1 Chy04g00255 224154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00255 268 Gene3D - 1 265 IPR036815 -
Chy04g00255 268 SMART 1433_4 5 265 IPR023410 -
Chy04g00255 268 Coils Coil 212 232 - -
Chy04g00255 268 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 3 267 - -
Chy04g00255 268 ProSitePatterns 14-3-3 proteins signature 1. 57 67 IPR023409 -
Chy04g00255 268 PRINTS 14-3-3 protein zeta signature 225 254 IPR000308 -
Chy04g00255 268 PRINTS 14-3-3 protein zeta signature 51 80 IPR000308 -
Chy04g00255 268 PRINTS 14-3-3 protein zeta signature 100 124 IPR000308 -
Chy04g00255 268 PRINTS 14-3-3 protein zeta signature 131 153 IPR000308 -
Chy04g00255 268 PRINTS 14-3-3 protein zeta signature 198 224 IPR000308 -
Chy04g00255 268 Pfam 14-3-3 protein 36 252 IPR023410 -
Chy04g00255 268 PANTHER 14-3-3 PROTEIN 3 267 IPR000308 -
Chy04g00255 268 PIRSF 14-3-3 1 265 IPR000308 -
Chy04g00255 268 SUPERFAMILY 14-3-3 protein 4 254 IPR036815 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00255 K06630 YWHAE; 14-3-3 protein epsilon - csv:101213169 464.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01367 Chy04g00255 CCT
Chy03g01367 Chy04g00255 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00255 Chy-Chr4:2267948 Chy07g00921 Chy-Chr7:13090532 3.32E-113 dispersed
Chy01g00337 Chy-Chr1:2449352 Chy04g00255 Chy-Chr4:2267948 6.09E-125 transposed
Chy03g00712 Chy-Chr3:9626076 Chy04g00255 Chy-Chr4:2267948 2.28E-122 transposed
Chy03g01367 Chy-Chr3:16528069 Chy04g00255 Chy-Chr4:2267948 7.33E-72 transposed
Chy10g01053 Chy-Chr10:15730984 Chy04g00255 Chy-Chr4:2267948 1.34E-131 transposed
Chy03g01366 Chy-Chr3:16525667 Chy04g00255 Chy-Chr4:2267948 1.65E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g412 . . . . . . . . Cmo05g00524 . Cma01g01607 . Car01g01226 . . . Cpe07g00087 Bhi04g00762 . . . Hepe10g0497 . Lcy13g1561 Cla08g01110 Cam08g1563 Cec08g1137 Cco08g1263 Clacu08g1267 . Cre08g1047 . . Cone8ag0206 Cone12ag0218 Lsi04g02235 Csa03g04446 Chy04g00255 Cme03g01863 . . . . . . . . . Cmo01g01654 . Cma12g00101 Cma05g00501 Car05g00448 . . Cpe02g00372 . . . . . . . Cla11g01382 Cam11g1440 Cec11g1466 Cco11g1462 Clacu11g1597 Cmu11g1416 Cre11g1836 Lsi08g00896 Csa02g02151 Chy03g01367 Cme04g00285
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00245 CCT 5 242 14-3-3 family AT4G09000 90.8 3.1e-118 421.8
Chy03g01354 CCT 4 261 14-3-3 family AT4G09000 84.1 1.9e-115 412.5
Chy07g00921 . 4 241 14-3-3 family AT4G09000 87.0 2.3e-113 405.6
Chy04g00220 . 11 256 14-3-3 family AT4G09000 72.8 3.9e-97 351.7
Chy01g00337 . 7 238 14-3-3 family AT4G09000 73.1 2.0e-93 339.3
Chy03g01292 . 10 299 14-3-3 family AT4G09000 61.4 3.2e-91 332.0
Chy10g01053 . 4 245 14-3-3 family AT4G09000 70.9 1.0e-89 327.0
Chy03g00712 . 105 318 14-3-3 family AT4G09000 71.8 1.2e-82 303.5
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT4G09000 66.0 2.1e-82 302.8
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT4G09000 76.5 3.7e-47 185.7
Chy04g00245 CCT 5 258 14-3-3 family AT1G78300 90.2 2.0e-123 438.7
Chy03g01354 CCT 6 281 14-3-3 family AT1G78300 84.1 3.2e-121 431.4
Chy07g00921 . 6 253 14-3-3 family AT1G78300 87.1 3.6e-117 417.9
Chy04g00220 . 11 257 14-3-3 family AT1G78300 73.3 6.5e-98 354.0
Chy01g00337 . 7 247 14-3-3 family AT1G78300 71.2 5.7e-94 340.9
Chy03g01292 . 11 300 14-3-3 family AT1G78300 62.1 1.4e-92 336.3
Chy10g01053 . 8 269 14-3-3 family AT1G78300 68.2 1.3e-90 329.7
Chy03g00712 . 105 336 14-3-3 family AT1G78300 69.2 1.1e-84 310.1
Chy04g00255 CCT,ECH 1 262 14-3-3 family AT1G78300 63.3 2.6e-83 305.4
Chy03g01367 CCT,ECH 10 142 14-3-3 family AT1G78300 70.7 4.2e-49 191.8
Chy07g00921 . 6 259 14-3-3 family AT5G38480 90.2 1.5e-123 439.1
Chy04g00245 CCT 6 252 14-3-3 family AT5G38480 85.0 1.1e-113 406.4
Chy03g01354 CCT 6 271 14-3-3 family AT5G38480 79.7 2.9e-111 398.3
Chy04g00220 . 10 261 14-3-3 family AT5G38480 71.0 2.9e-95 345.1
Chy01g00337 . 7 247 14-3-3 family AT5G38480 72.0 1.0e-92 336.7
Chy10g01053 . 8 261 14-3-3 family AT5G38480 71.5 6.8e-92 334.0
Chy03g01292 . 10 304 14-3-3 family AT5G38480 61.4 1.7e-90 329.3
Chy03g00712 . 105 334 14-3-3 family AT5G38480 70.7 1.8e-84 309.3
Chy04g00255 CCT,ECH 5 267 14-3-3 family AT5G38480 64.5 2.2e-82 302.4
Chy03g01367 CCT,ECH 8 139 14-3-3 family AT5G38480 72.0 2.7e-48 189.1
Chy03g01366 . 152 272 14-3-3 family AT5G38480 67.5 3.7e-37 152.1
Chy04g00245 CCT 4 242 14-3-3 family AT1G35160 89.1 3.2e-117 418.3
Chy03g01354 CCT 3 261 14-3-3 family AT1G35160 83.4 3.9e-115 411.4
Chy07g00921 . 3 240 14-3-3 family AT1G35160 86.6 2.4e-112 402.1
Chy04g00220 . 1 256 14-3-3 family AT1G35160 72.3 5.1e-99 357.8
Chy01g00337 . 2 237 14-3-3 family AT1G35160 71.0 3.5e-92 335.1
Chy03g01292 . 1 299 14-3-3 family AT1G35160 60.9 2.3e-91 332.4
Chy10g01053 . 8 245 14-3-3 family AT1G35160 71.7 1.3e-89 326.6
Chy03g00712 . 105 318 14-3-3 family AT1G35160 71.8 5.1e-83 304.7
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT1G35160 66.0 2.5e-82 302.4
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT1G35160 74.8 1.7e-46 183.3
Chy03g01366 . 146 272 14-3-3 family AT1G35160 60.5 1.2e-36 150.6
Chy07g00921 . 4 254 14-3-3 family AT5G16050 86.5 7.6e-118 420.2
Chy04g00245 CCT 4 251 14-3-3 family AT5G16050 79.1 2.5e-105 378.6
Chy03g01354 CCT 3 272 14-3-3 family AT5G16050 73.7 3.3e-105 378.3
Chy04g00220 . 10 258 14-3-3 family AT5G16050 67.9 6.7e-90 327.4
Chy03g01292 . 10 301 14-3-3 family AT5G16050 58.6 1.7e-85 312.8
Chy01g00337 . 1 246 14-3-3 family AT5G16050 65.1 2.5e-84 308.9
Chy10g01053 . 3 252 14-3-3 family AT5G16050 63.9 6.1e-83 304.3
Chy03g00712 . 119 325 14-3-3 family AT5G16050 72.5 8.8e-82 300.4
Chy04g00255 CCT,ECH 5 261 14-3-3 family AT5G16050 61.5 3.8e-77 285.0
Chy03g01367 CCT,ECH 7 139 14-3-3 family AT5G16050 73.7 4.4e-49 191.8
Chy04g00220 . 9 256 14-3-3 family AT5G10450 81.9 8.6e-109 390.2
Chy03g01292 . 9 299 14-3-3 family AT5G10450 71.8 4.7e-107 384.4
Chy04g00245 CCT 1 242 14-3-3 family AT5G10450 79.0 6.3e-104 374.0
Chy07g00921 . 4 259 14-3-3 family AT5G10450 73.9 1.1e-103 373.2
Chy03g01354 CCT 3 270 14-3-3 family AT5G10450 71.4 5.0e-101 364.4
Chy01g00337 . 1 238 14-3-3 family AT5G10450 68.0 1.7e-88 322.8
Chy10g01053 . 3 245 14-3-3 family AT5G10450 65.0 4.7e-83 304.7
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT5G10450 61.4 4.6e-78 288.1
Chy03g00712 . 119 318 14-3-3 family AT5G10450 68.0 6.2e-75 277.7
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT5G10450 72.3 1.5e-44 176.8
Chy07g00921 . 6 260 14-3-3 family AT3G02520 93.0 1.2e-128 456.1
Chy04g00245 CCT 5 258 14-3-3 family AT3G02520 84.4 2.4e-116 415.2
Chy03g01354 CCT 6 271 14-3-3 family AT3G02520 80.9 2.3e-114 408.7
Chy04g00220 . 10 258 14-3-3 family AT3G02520 72.3 2.5e-97 352.1
Chy03g01292 . 10 301 14-3-3 family AT3G02520 62.3 6.4e-93 337.4
Chy10g01053 . 8 262 14-3-3 family AT3G02520 67.7 2.1e-91 332.4
Chy01g00337 . 1 238 14-3-3 family AT3G02520 71.3 6.0e-91 330.9
Chy03g00712 . 105 336 14-3-3 family AT3G02520 68.3 2.9e-85 312.0
Chy04g00255 CCT,ECH 1 260 14-3-3 family AT3G02520 64.9 1.6e-83 306.2
Chy03g01367 CCT,ECH 7 141 14-3-3 family AT3G02520 72.1 5.7e-49 191.4
Chy03g01366 . 148 272 14-3-3 family AT3G02520 63.8 2.2e-37 152.9
Chy04g00220 . 9 256 14-3-3 family AT5G65430 81.5 9.6e-110 393.3
Chy03g01292 . 9 299 14-3-3 family AT5G65430 72.9 1.1e-108 389.8
Chy04g00245 CCT 1 242 14-3-3 family AT5G65430 79.8 2.1e-104 375.6
Chy07g00921 . 7 241 14-3-3 family AT5G65430 79.7 4.6e-104 374.4
Chy03g01354 CCT 8 261 14-3-3 family AT5G65430 74.5 2.4e-100 362.1
Chy01g00337 . 1 238 14-3-3 family AT5G65430 69.7 6.5e-90 327.4
Chy10g01053 . 8 245 14-3-3 family AT5G65430 68.5 2.8e-85 312.0
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT5G65430 62.9 2.3e-79 292.4
Chy03g00712 . 119 318 14-3-3 family AT5G65430 70.5 1.8e-76 282.7
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT5G65430 73.9 3.7e-45 178.7
Chy01g00337 . 1 266 14-3-3 family AT2G42590 81.3 1.9e-119 425.6
Chy10g01053 . 6 281 14-3-3 family AT2G42590 70.6 1.6e-102 369.4
Chy04g00255 CCT,ECH 3 264 14-3-3 family AT2G42590 69.1 8.4e-96 347.1
Chy03g00712 . 105 332 14-3-3 family AT2G42590 75.0 1.8e-93 339.3
Chy07g00921 . 8 248 14-3-3 family AT2G42590 73.0 9.6e-92 333.6
Chy04g00245 CCT 8 245 14-3-3 family AT2G42590 70.6 2.6e-89 325.5
Chy03g01354 CCT 8 267 14-3-3 family AT2G42590 65.4 8.4e-88 320.5
Chy04g00220 . 11 258 14-3-3 family AT2G42590 62.5 1.1e-79 293.5
Chy03g01292 . 11 301 14-3-3 family AT2G42590 53.3 2.4e-74 275.8
Chy03g01367 CCT,ECH 10 134 14-3-3 family AT2G42590 80.0 6.7e-53 204.5
Chy03g01366 . 150 272 14-3-3 family AT2G42590 71.5 4.4e-44 175.3
Chy01g00337 . 6 242 14-3-3 family AT1G22300 78.1 6.5e-103 370.5
Chy10g01053 . 5 250 14-3-3 family AT1G22300 76.0 1.0e-100 363.2
Chy04g00255 CCT,ECH 1 260 14-3-3 family AT1G22300 70.4 1.6e-93 339.3
Chy03g00712 . 105 323 14-3-3 family AT1G22300 76.7 1.0e-92 336.7
Chy07g00921 . 5 246 14-3-3 family AT1G22300 70.7 3.3e-91 331.6
Chy04g00245 CCT 8 245 14-3-3 family AT1G22300 69.3 1.0e-87 320.1
Chy03g01354 CCT 8 265 14-3-3 family AT1G22300 65.4 9.4e-86 313.5
Chy04g00220 . 11 258 14-3-3 family AT1G22300 62.4 4.2e-78 288.1
Chy03g01292 . 11 301 14-3-3 family AT1G22300 53.3 2.0e-72 269.2
Chy03g01366 . 148 272 14-3-3 family AT1G22300 79.2 1.2e-48 190.3
Chy03g01367 CCT,ECH 10 133 14-3-3 family AT1G22300 77.4 1.2e-48 190.3
Chy01g00337 . 6 246 14-3-3 family AT1G34760 80.5 4.1e-105 377.9
Chy10g01053 . 5 251 14-3-3 family AT1G34760 79.8 2.2e-103 372.1
Chy03g00712 . 105 326 14-3-3 family AT1G34760 79.3 2.2e-95 345.5
Chy04g00255 CCT,ECH 1 263 14-3-3 family AT1G34760 71.5 2.1e-93 339.0
Chy07g00921 . 5 250 14-3-3 family AT1G34760 71.1 1.1e-89 326.6
Chy04g00245 CCT 8 249 14-3-3 family AT1G34760 69.4 7.7e-88 320.5
Chy03g01354 CCT 8 264 14-3-3 family AT1G34760 67.3 5.5e-86 314.3
Chy04g00220 . 11 257 14-3-3 family AT1G34760 61.1 1.4e-76 283.1
Chy03g01292 . 11 300 14-3-3 family AT1G34760 52.4 8.5e-71 263.8
Chy03g01367 CCT,ECH 8 137 14-3-3 family AT1G34760 81.5 6.8e-52 201.1
Chy03g01366 . 148 272 14-3-3 family AT1G34760 76.0 6.6e-47 184.5
Chy10g01053 . 2 269 14-3-3 family AT1G26480 83.3 2.2e-117 418.7
Chy03g00712 . 105 333 14-3-3 family AT1G26480 86.9 3.2e-108 388.3
Chy01g00337 . 3 242 14-3-3 family AT1G26480 80.0 4.6e-107 384.4
Chy04g00255 CCT,ECH 3 261 14-3-3 family AT1G26480 71.0 3.4e-94 341.7
Chy04g00245 CCT 8 247 14-3-3 family AT1G26480 74.2 1.1e-92 336.7
Chy07g00921 . 2 256 14-3-3 family AT1G26480 71.6 9.3e-92 333.6
Chy03g01354 CCT 8 279 14-3-3 family AT1G26480 67.0 1.5e-89 326.2
Chy04g00220 . 11 254 14-3-3 family AT1G26480 64.3 3.1e-79 292.0
Chy03g01292 . 11 297 14-3-3 family AT1G26480 54.4 1.5e-73 273.1
Chy03g01367 CCT,ECH 13 141 14-3-3 family AT1G26480 76.0 1.2e-49 193.7
Chy03g01366 . 149 272 14-3-3 family AT1G26480 75.0 2.4e-47 186.0
Chy01g00337 . 6 236 14-3-3 family AT1G78220 50.9 3.7e-63 238.4
Chy10g01053 . 5 243 14-3-3 family AT1G78220 51.3 1.4e-62 236.5
Chy03g00712 . 105 316 14-3-3 family AT1G78220 50.2 1.3e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00255 Chy_Chr04 FPKM 13.700057 15.06205 25.580534 24.783443 23.554575 21.541466 22.181467 17.907824 18.016953 18.295397