Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00256 ATGGACAAACTGTGCTGTTTTAATGCTTCATATTCTGGGATTAGATCCGCATTGAATTACGGTAAAGGAAGAAGCCACGAGGGGATAATCAAGTATGGGTTCTGCCTGGTTAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGACTCTTTGCTATTTACGATGGTCATTTAGGAGAAAGTGTGCCTGCCTATTTACAAAAGCATTTGTTTTCTAATATCCTTAAAGAGGAAGAGTTTTGGGTTGATCCCAACAGCTCCATCTCAAAAGCATATGAGAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCAAAGACTATGGGTGGCCAATGTTGGAGATTCGCGTGCAGTTCTTTCTAGAGGGGGTGAAGCTGTACAGATGACCATCGATCATGAGCCGAATACGAATACGGAACGTCGAACCATTGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGACGTACCTCGAGTGAATGGCCAGTTAGCAGTTTCACGAGCATTTGGAGACAAAAGTCTAAAATCTCACTTGCGATCTGATCCTGATATACGTGATATTAATGTAGATGCCAACACGGACATATTAATTCTTGCCAGCGACGGTCTATGGAAGGTCATGGCCAACCAAGAAGCTGTCGATATTGCACGAAGAATCAAAGACCCACTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTAGGTTTAGAATTAGAAAGCTGAAGAGCAAATCGCTTACCCCTCCCAACGAACTTGATCCAATTCCGAACCTTTATCTGCCAATTCTTCCACGACCCCTCCGCCAAATGCCATCCTTTTGCAACTTCACTGAGCCGAGAAATCGATGTCTACGTTCTACCATCATCAGAGTCAATGGGAATGCCATACGCATCTTCACCCCACTTCAATGTGTATGTGCCAGACCTTGTCTTCTTTTGGGAATCGTTCAGACTCGGCCAGAGTGGTCTGACTCGTTCCAAGCCGAATGCATCATGCGTGTAATGGCTGCCAACTCAGTGCAGAAGCTGAGCCTCGTCGGGTTGAGCTATGGTGGCTTTGTGTAG 1197 44.7 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVRFRIRKLKSKSLTPPNELDPIPNLYLPILPRPLRQMPSFCNFTEPRNRCLRSTIIRVNGNAIRIFTPLQCVCARPCLLLGIVQTRPEWSDSFQAECIMRVMAANSVQKLSLVGLSYGGFV* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2272719 2278392 - Chy4G069740.1 Chy04g00256 224155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00256 398 ProSiteProfiles PPM-type phosphatase domain profile. 31 280 IPR001932 -
Chy04g00256 398 PANTHER PROTEIN PHOSPHATASE 2C 10 281 IPR015655 GO:0004722|GO:0006470
Chy04g00256 398 Pfam Protein phosphatase 2C 40 273 IPR001932 -
Chy04g00256 398 SMART PP2C_SIG_2 42 280 IPR001932 -
Chy04g00256 398 Gene3D - 26 289 IPR036457 -
Chy04g00256 398 SUPERFAMILY PP2C-like 25 280 IPR036457 -
Chy04g00256 398 CDD PP2Cc 30 280 IPR001932 -
Chy04g00256 398 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 10 281 - -
Chy04g00256 398 SMART PP2C_4 23 278 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00256 Chy-Chr4:2272719 Chy12g00307 Chy-Chr12:3345550 4.52E-41 dispersed
Chy01g00318 Chy-Chr1:2287841 Chy04g00256 Chy-Chr4:2272719 7.32E-109 transposed
Chy02g00083 Chy-Chr2:534855 Chy04g00256 Chy-Chr4:2272719 5.60E-96 transposed
Chy02g02336 Chy-Chr2:27308917 Chy04g00256 Chy-Chr4:2272719 1.10E-28 transposed
Chy03g00572 Chy-Chr3:8152002 Chy04g00256 Chy-Chr4:2272719 1.76E-61 transposed
Chy05g00225 Chy-Chr5:1873753 Chy04g00256 Chy-Chr4:2272719 4.15E-14 transposed
Chy06g01251 Chy-Chr6:11498707 Chy04g00256 Chy-Chr4:2272719 1.65E-67 transposed
Chy07g00063 Chy-Chr7:582051 Chy04g00256 Chy-Chr4:2272719 8.74E-108 transposed
Chy07g00121 Chy-Chr7:1044965 Chy04g00256 Chy-Chr4:2272719 2.28E-21 transposed
Chy07g00305 Chy-Chr7:2510023 Chy04g00256 Chy-Chr4:2272719 3.41E-72 transposed
Chy07g00835 Chy-Chr7:10720972 Chy04g00256 Chy-Chr4:2272719 1.90E-159 transposed
Chy10g01167 Chy-Chr10:16522126 Chy04g00256 Chy-Chr4:2272719 1.93E-23 transposed
Chy03g01368 Chy-Chr3:16530192 Chy04g00256 Chy-Chr4:2272719 6.47E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00256 K17506 - csv:101213414 564.303