Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00266 ATGGCGTCCACCGGTAAAATGGTTTTGGCATTGGCCAGAAACGTTTCCCTCAGTGTTCCACTTCAGTCACAGCAACCTCATTATCCACTTATTTTCCGGGGATTCTTCTCCACTGATCCTTCAATTTCCATTACGAATCCTCTGCTTCTCAAATTGCTTCAGGAGCCAACTTCGTCTGTCAAATCCGTGCTCGATTCCCAGGAAAATGGTTTTCTCTGTAGCTCCCGCCTTTCCTTGAATGCCCTCGTTACGTCTCTTATATCTTCTTCAATGCCCAAGAAGGCTCAGTTGGTTTTGGAATGGAAATTGGAGAATATGAGCAAAAAAAATGAGAGAGATCTTGATTTGTACATCAACCTGATATGTCTATGCGGAAAGCTTAGAAATTCCTCTCTTGCAATGCGTGTCTTCACTGTTATGGAATTTCAAGGAGTTAAACCCACGGTGACTGCTTTCAATTCACTTATAGAGGCTTGTATATCTTCCAATAATATGATAACTGCCTTTAGCATATTTGAAGTAATGAAAAACTCCAAAAATTTTAAACCCAACACTGACACTTTCTATTATTTCATTTCTGCATTCGCCAAATTGCACGATGTCAACTCTATGCAAGCATGGTATTCAGCCAAAAAAGCGTTTGAATTCTCTCCTGACCTTCGAACCTACGAAGTCCTTATACATGGTAGTGTGAAAGCGAACTGCTTTGATTTTGGTGTTAAATGTTTTGAGGAAATGATGTTATCTGACATTGTACCCAACACAATCATATTGGAGAATATGCTTGAAGGGCTCTGTAAGAGGAAAAATTTTGATGAATTGAAGAAGTTCCTAAATGTTGTGCTTGACAACGGATGGGAGATCGATTGGAATGTGGTTGAGAAATTCATTCCAGATGTTTATACATATGACCAAAAGAAAACACACCCCACTCTAAGTTCTGAAGATGTACAAAGTGAATCCAGTTGTTTAGATTGCACATCCAGCGAAAGTTGTGGAATAGTGCGCTCAAGAACAAAATTGATGAACATTTTGATAGAAAAACGGAAACCTCAGGAAGCACAGAACATTTTTAACAATTTGATCGCGGAGGGGCATAGGCCTTCTCTAGTAACATATACATCCCTGCTGACTGCATTGACTGTCCAAAAGCGCTTTAACATTGTGACTTGTGGATATTGCAAGGAAGCTGGTAGACTAAAGGAGGCCATGAGATTTGTATGCAATATGAAGGATCTTGGCGTTCAGCCTAATTTGTTCTCATTGATTCATATGGTCAGAGCCAATACTGGAAAAGAAAACGTGCAGGTTTTGATGTTGATGAAAGAATTTGGAGTCAAGCCAGATGTGATTACTTTTAGCACAGTACTGAATGCTTGGAGCACGACTGGATTCATGGGTTCTGGCAAAATGGATAACGCCATAAAGATCTTAAACAAAATGTGTGAATATGGAGTTTCTCCTAATCTGAAGACATTTGAGACTATAATATGGGGATATGGAGAGGCAAAAAAGCCATGGAAGGCAGAAGAAATGCTTCAAATAATGGAGGAATATGAAATTAAACTTGAGAAATCTACCATCTTATTAGTTGCAGAAGCCTGGCGCTCTATTGGATTGACAAAAGAAGCAAACAGAATCATAGGCATTATGAAACGCATGGAAAGCACTGATCAAACAGAACGAGATGAGAGAAGAGAACTCGAACAAGTTCTATAA 1719 39.33 MASTGKMVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSVKSVLDSQENGFLCSSRLSLNALVTSLISSSMPKKAQLVLEWKLENMSKKNERDLDLYINLICLCGKLRNSSLAMRVFTVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEVLIHGSVKANCFDFGVKCFEEMMLSDIVPNTIILENMLEGLCKRKNFDELKKFLNVVLDNGWEIDWNVVEKFIPDVYTYDQKKTHPTLSSEDVQSESSCLDCTSSESCGIVRSRTKLMNILIEKRKPQEAQNIFNNLIAEGHRPSLVTYTSLLTALTVQKRFNIVTCGYCKEAGRLKEAMRFVCNMKDLGVQPNLFSLIHMVRANTGKENVQVLMLMKEFGVKPDVITFSTVLNAWSTTGFMGSGKMDNAIKILNKMCEYGVSPNLKTFETIIWGYGEAKKPWKAEEMLQIMEEYEIKLEKSTILLVAEAWRSIGLTKEANRIIGIMKRMESTDQTERDERRELEQVL* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2360097 2367659 - Chy4G069840.1 Chy04g00266 224165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00266 572 Gene3D Tetratricopeptide repeat domain 339 571 IPR011990 GO:0005515
Chy04g00266 572 Pfam PPR repeat 222 249 IPR002885 -
Chy04g00266 572 Gene3D Tetratricopeptide repeat domain 48 202 IPR011990 GO:0005515
Chy04g00266 572 Gene3D Tetratricopeptide repeat domain 203 309 IPR011990 GO:0005515
Chy04g00266 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Chy04g00266 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Chy04g00266 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 417 IPR002885 -
Chy04g00266 572 PANTHER OS01G0228400 PROTEIN 464 565 - -
Chy04g00266 572 PANTHER OS01G0228400 PROTEIN 387 466 - -
Chy04g00266 572 PANTHER OS01G0228400 PROTEIN 302 389 - -
Chy04g00266 572 PANTHER OS01G0228400 PROTEIN 78 276 - -
Chy04g00266 572 Pfam Pentatricopeptide repeat domain 111 159 IPR002885 -
Chy04g00266 572 Pfam Pentatricopeptide repeat domain 464 501 IPR002885 -
Chy04g00266 572 Pfam Pentatricopeptide repeat domain 408 460 IPR002885 -
Chy04g00266 572 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Chy04g00266 572 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00266 - - - csv:101208133 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00266 Chy-Chr4:2360097 Chy02g01816 Chy-Chr2:20226514 3.64E-49 dispersed
Chy04g00266 Chy-Chr4:2360097 Chy03g01291 Chy-Chr3:15932124 1.13E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013351 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00266 Chy_Chr04 FPKM 15.341326 14.088128 15.418201 16.729368 11.457365 11.495621 12.118265 22.153013 21.108412 26.867039