Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00273 ATGGAGTCTCGTTTTTCACTCCTACTTCTTCTACTGATCTCCCTTGGAATTGTTTGTAGTTATGCTGTTGCTGCTGCTGATGAAATGGACGTCTCGCCTGAACAGTATTGGGATTCTGCCTTGCCAAACACTCCTATCCCCAAAGCTATCAAAAGTCTCCTTAGTTCGGACTTTATAGAAGGAAAAAGCACTTCGGTGAATGTTGGTAAAGGGGGCGTAAACGTCAACACCGGAAAAGGTAAGCCTAGAGGCACCTCCGTTAACGTCGGAAAAGGCGGAGTTAACGTCAACGCTCCAAAACCAAAGCAAGGAGGCACTTCCGTTAACGTTGGTAAAGGAGGCGTTAACGTTCACACCCGTCGAAAAGGTAAACCGGTTTATGTTGGAGTTAAACCGGGCGCCGACCCCTTTAATTATGTATACGCAGCCACACAAACCCAAGTTCATGATGACCCAAACACAGCCCTCTTCTTTCTTGAAGAAGATATCCACCCTAAGTCTAAATTCACCCTTCATTTCCCTAAACAAACAACAACAACAACCACTAAGTTCTTGCCACATCATGTTGCGAAATCACTCCCTTTCTCTTCCCAAAAACTGCCCCAAATCCTCACCCACTTCTCCATTCCTCCCACAAGTCTCGAGGCCGAGTCGATTCGAAACACGATTGACCAATGTGAAGCACCTGGCATTGTCAGTGAAGATAAGTTTTGCGCTACGTCGTTGGAGTCCATGGTTGATTTCAGTACTTCCAAGTTGGGAAAGAAGGTGACATTGATCTCAACTGAAGTCGAGAAAGATACAAATTTGCAAGCGTTTACTGTTGTGAATTTGACGAAGAAATCATCAGGAACAGACTCTGCAGTTGCGTGTCATAAGTTGAGCTATCCATATGCAGTGTTTTATTGTCATTACGCACAACACACACGTGTTTACAAGGTTAGCTTGTTGGGTGCCGATGGAACTAAAGCTGACGTGGCAGCCGTGTGTCACACCGACACATCAGCTTGGAATCCAAAGCATTTGGCTTTTCAGGTGTTGAAGGTGAAGCCAGGGACAGTTCCGCTGCATTTCTTATTGGAGGAGGCTTGCTTTGGTATTATGGTAGAAACAGAGCAAGTGGAGAACGTTGAATTTCAATGGGGCAAAAAGAAAGGAATTGGTGGGAAGAAGAAGGACGTGACCTTTTATGAATCTTTTACTTACGATGGTGTAGAATATTTTCTTTATGACTCTGTCTACCTATATAAGGAAGGTGAACCAGAGCCTTACATTGGTAAACTTCTTAAAATCTGGCAGAATCCTGATAAGACAAAGAAAGTAAAAATTCTTTGGTTTTTTCGATCTTGTGAGATTCTTAATTATCTTGGAGGTGTAGACACACGGGAGAATGAATTATTTTTGGCATCCGGCGATGGTATTGGTCTTGCCAATGTTAATTCTCTGGAAGTACTTGCTGGAAAGTGCAACGTTCTCTGCATTTCAAATGACAGCAGAAATCCACAACCTTCGGATGAAGCACTCAAAAAGGCTGATTTTGTATTTTGTCGTACATTTGATGTTGGAAAACAAGAGGTCTGCAATGAGATATGTGATAAAATTGCTGGAGTGGAAGCTAAATTTTTACTTAATAAAGCAGATACGTCAAAAGATGTTAAGAGGACCGATAAGGATGGGAAAGATGCAAGTGGCATTGCAATTGTAAATACTCAATTAGAAGATCTTTCTGGAAGGGACATTTCTAATGGAGAATTGACTCGGACGACTAATGACAGCTCTCTTGAGAAGTCCAAAAAGGAAAATGTTGATTTGAAGGGGTCTATAGAGAAATCCTCCAATGAGGAAAAGTCGAGTGCACATGCAATCGAAAGAGGAATTGGAATGGGTAAAACTAGTAGTATTATCGAAAGAGGAATTGGAATGGGTAAAACTAGTAGTATTATCGAAAGAGGAATTGGAATGGGTAAAACTAGTAGTATTATTAAACATGAAAACATCTTAGGTGATAAGGTCCCTTCAAAGCTCAAAATTGATTCTAATGAGAAGCCTGGTAATGCTAAGGATGTCGAAGGTAGAGTTAAAAGTCTAAGGGAATCTGCTGAAGTTGAGCATAGGCCAGCAAAGAAGGCAAAACTAGATAGCTCTGTTCAGTTATCTCCTGGAAAGACCAAGAATGACATTGAAAAGCTTGGTATTGATCACAACAATGTTGACACACTGGGTTCCTCGCCTAAGGCTCTTGTTTCTGAAGATGCTTCCAGAGCCAAAAATGTAAAAGATTCTCGTGAAACCAAAGATAGCTTTTTAAAGAAGCCCAAGGTAGAAGAGAAGCCAACAAAGGTTTCTAATGGCAAGAACCTAAAGGCCTCTTCCCTAATAGACGGTCAAGTTGTGGAAGTTACTAGAAGGCCAGATGCTGATAGAAGCAGATGGTTCAAGGGACTTCCGTGGGAAGAAAGAATAAAAGATGCACATGAGCAAGGAACACTTGTTCTAATTCAGAATTTGGATCCATCTTACACTTCCGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAATGAGAGTTGCACAGCTAAGATGATTCAGCGAACTGCAAATTCTATGCCTCACATAGGTCAAGCTTATGTTGTATTCAAAACCAAAGAAGCAGCAGAGAAAGTGGTCAGAAAATTACACGAAGGTTGCTTATTACTTGCAAATGGAAGTGTTCTTGTTGGTAGCTTTGAGACTCCTCATCTTTCGTCAAAGAAACAAACTTTTTTTGGGCATCACTGTATCGATAAGCTTAGACATCAAATGCAACGTGAGATGAAAGAAGCTGTATCAACTTCGCATTGTTCTCAGCCAAATACAATAGAATATGACATGGCCATGGAATGGTGTTTACAACAAGAAAGATCAGAACTTGTCGGCAAACAGTTGTTCAAGGTCTAG 2937 41.4 MESRFSLLLLLLISLGIVCSYAVAAADEMDVSPEQYWDSALPNTPIPKAIKSLLSSDFIEGKSTSVNVGKGGVNVNTGKGKPRGTSVNVGKGGVNVNAPKPKQGGTSVNVGKGGVNVHTRRKGKPVYVGVKPGADPFNYVYAATQTQVHDDPNTALFFLEEDIHPKSKFTLHFPKQTTTTTTKFLPHHVAKSLPFSSQKLPQILTHFSIPPTSLEAESIRNTIDQCEAPGIVSEDKFCATSLESMVDFSTSKLGKKVTLISTEVEKDTNLQAFTVVNLTKKSSGTDSAVACHKLSYPYAVFYCHYAQHTRVYKVSLLGADGTKADVAAVCHTDTSAWNPKHLAFQVLKVKPGTVPLHFLLEEACFGIMVETEQVENVEFQWGKKKGIGGKKKDVTFYESFTYDGVEYFLYDSVYLYKEGEPEPYIGKLLKIWQNPDKTKKVKILWFFRSCEILNYLGGVDTRENELFLASGDGIGLANVNSLEVLAGKCNVLCISNDSRNPQPSDEALKKADFVFCRTFDVGKQEVCNEICDKIAGVEAKFLLNKADTSKDVKRTDKDGKDASGIAIVNTQLEDLSGRDISNGELTRTTNDSSLEKSKKENVDLKGSIEKSSNEEKSSAHAIERGIGMGKTSSIIERGIGMGKTSSIIERGIGMGKTSSIIKHENILGDKVPSKLKIDSNEKPGNAKDVEGRVKSLRESAEVEHRPAKKAKLDSSVQLSPGKTKNDIEKLGIDHNNVDTLGSSPKALVSEDASRAKNVKDSRETKDSFLKKPKVEEKPTKVSNGKNLKASSLIDGQVVEVTRRPDADRSRWFKGLPWEERIKDAHEQGTLVLIQNLDPSYTSGEVEDIVWHAFNESCTAKMIQRTANSMPHIGQAYVVFKTKEAAEKVVRKLHEGCLLLANGSVLVGSFETPHLSSKKQTFFGHHCIDKLRHQMQREMKEAVSTSHCSQPNTIEYDMAMEWCLQQERSELVGKQLFKV* 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2401665 2416073 + Chy4G069910.1 Chy04g00273 224172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00273 978 PANTHER PROTEIN ANTI-SILENCING 1 368 977 - -
Chy04g00273 978 MobiDBLite consensus disorder prediction 579 627 - -
Chy04g00273 978 MobiDBLite consensus disorder prediction 672 711 - -
Chy04g00273 978 Gene3D - 817 913 IPR012677 -
Chy04g00273 978 MobiDBLite consensus disorder prediction 591 621 - -
Chy04g00273 978 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 829 912 IPR000504 GO:0003723
Chy04g00273 978 SMART BURP_2 155 369 IPR004873 -
Chy04g00273 978 ProSiteProfiles BURP domain profile. 157 369 IPR004873 -
Chy04g00273 978 SUPERFAMILY RNA-binding domain, RBD 821 898 IPR035979 GO:0003676
Chy04g00273 978 Coils Coil 594 614 - -
Chy04g00273 978 Gene3D - 375 527 IPR043151 -
Chy04g00273 978 Pfam BURP domain 156 361 IPR004873 -
Chy04g00273 978 PANTHER PROTEIN ANTI-SILENCING 1 368 977 - -
Chy04g00273 978 ProSiteProfiles BAH domain profile. 405 530 IPR001025 GO:0003682
Chy04g00273 978 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 831 894 IPR000504 GO:0003723
Chy04g00273 978 MobiDBLite consensus disorder prediction 672 785 - -
Chy04g00273 978 MobiDBLite consensus disorder prediction 752 782 - -
Chy04g00273 978 MobiDBLite consensus disorder prediction 70 116 - -
Chy04g00273 978 CDD RRM_SF 831 893 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00273 - - - csv:101208860 1092.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01737 Chy-Chr3:18838917 Chy04g00273 Chy-Chr4:2401665 2.11E-26 dispersed
Chy04g00273 Chy-Chr4:2401665 Chy11g00393 Chy-Chr11:3736315 6.37E-31 dispersed
Chy04g00273 Chy-Chr4:2401665 Chy01g00801 Chy-Chr1:6503120 1.29E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g342 Blo01g01710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00305
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00273 Chy_Chr04 FPKM 25.177853 25.220779 45.222881 44.07724 26.561291 25.25421 28.948502 56.539536 55.815041 61.637165