Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00278 ATGGATTCAAATTCAAAGAAGTCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCAAACTCATCGAAGACGGCGAATAAAATCACGGGCACGGCGGCGGGACCTGCCGGAAAGAGCATAAAGTTTCTGAAACGGACTTTATCGTCGGCCGGCGGGGAAGTGCCGAAAGGGTATTTGGCAGTGAGTGTAGGGGAAGAGCAAAAGCGATTTGTTATACCGACGTCGTATTTAGGGCATCCGGCGTTTGAGATTCTGTTGAGAGAAGCGGAGGAGGAATTTGGGTTTCAACAAACGGGGGTTTTGAGGTTGCCGTGTGAGGTATTTGTATTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGATTTGTTGTTAGGAGGGGAAGAGGTTTTGAATTTTTGTTCATTGGAATCGTTGCAGTTAACGTCGTCATCACACCGTCCACAGAGTCCAATAAATAAAAATTTAAAGGTGTTTGGTGACACGAAATGGGATGAAATCCTAATATTTGAATCTGAAACAAAAGTGGAAATGAACTTCGAGTCTCTAACTATCTTAGTTCTCCTTCTCTCTTTCTCCACCGCCGTGTACTCTCTACATAAAGAAACCGCCGCCGCGTGCGCCGCCGAATCCCTACCGGACCGACGAAATCTACGGTCAGATCAAATCACGGTCCTAATCAACGGTTACTACGAGTCCCGCATCCCTCTACTCCAATCACTAGTCGCCAGGTATGCCGCATCCCCATTCGTACACACCGTACTGATCCTCTGGGGAAATCCCTCAACTTCAACAGAAACCCTAACAAAATTGGCTCAAAACCTCACCACAGGACCCATATCCCTAATCCGTCAATCTTCAAACAGCCTCAATTCTCGCTTTCTTCCCCGAAAATCCATACAAACCCGTGCCGTTTTGATCTGTGACGACGACGTCGAGATCGACACACAGTCTCTGGAATTCGCTTTCAGAATTTGGGGGAGAAACCCCGAACGACTTGTCGGGTTCTTCGTCCGATCCCACGATCTAGACCTCTCAAGGAGGGAATGGATCTACACCGTTCATCAAGACAAGTACTCGATCGTACTGACGAAACTGATGATTCTGAAGGCGGAGTATTTGTTCGAGTATTCTTGTGGAGGTGGAGCGGCGATGGCCGACATGAGGAGAGTTGTCGATCTGGAGCGTAACTGCGAGGATATCTTGATGAATTTCGTTGTGGCCGATATGTCGAACGCTGGGCCTATTATGGTTGCGGCGCAGAGGATCAGAGATTGGGGAGACCCACGGAATGAGTACGATGATGGGAATGAGCGGCTGAGATTGAGGGAAGGGGTTAGTGAGATAGGGCTGAGTAATAGGAAAGGAGAGCATAGGAAGAGAAGGGGACGGTGTATAACAGAGTTTCATAGACGGTTGGGGAGAATGCCGTTACGGTATAGTTACGGGAAGTCCGTTAACTCAATTGGCGAACAGGCTTTGTGTAGAAAGGGTAGGAAGTTAGTCCCTTGTGATCAAAATGTACTATGA 1563 47.66 MDSNSKKSNKIRDIVRLQQILKKWRKLANSSKTANKITGTAAGPAGKSIKFLKRTLSSAGGEVPKGYLAVSVGEEQKRFVIPTSYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVFVFENVVKLVEEKKKGDLLLGGEEVLNFCSLESLQLTSSSHRPQSPINKNLKVFGDTKWDEILIFESETKVEMNFESLTILVLLLSFSTAVYSLHKETAAACAAESLPDRRNLRSDQITVLINGYYESRIPLLQSLVARYAASPFVHTVLILWGNPSTSTETLTKLAQNLTTGPISLIRQSSNSLNSRFLPRKSIQTRAVLICDDDVEIDTQSLEFAFRIWGRNPERLVGFFVRSHDLDLSRREWIYTVHQDKYSIVLTKLMILKAEYLFEYSCGGGAAMADMRRVVDLERNCEDILMNFVVADMSNAGPIMVAAQRIRDWGDPRNEYDDGNERLRLREGVSEIGLSNRKGEHRKRRGRCITEFHRRLGRMPLRYSYGKSVNSIGEQALCRKGRKLVPCDQNVL* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2467905 2474496 + Chy4G069960.1 Chy04g00278 224177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00278 520 Pfam Glycosyl transferase family 64 domain 234 495 IPR015338 GO:0016021|GO:0016757
Chy04g00278 520 PANTHER GLYCOSYLTRANSFERASE FAMILY PROTEIN 64 C3 194 515 - -
Chy04g00278 520 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 194 515 IPR004263 GO:0006486|GO:0016757
Chy04g00278 520 SUPERFAMILY Nucleotide-diphospho-sugar transferases 233 493 IPR029044 -
Chy04g00278 520 Pfam Auxin responsive protein 23 125 IPR003676 GO:0009733
Chy04g00278 520 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 230 502 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00638 Chy-Chr1:4501227 Chy04g00278 Chy-Chr4:2467905 2.14E-09 dispersed
Chy01g00871 Chy-Chr1:7749404 Chy04g00278 Chy-Chr4:2467905 4.16E-19 dispersed
Chy01g02097 Chy-Chr1:25692205 Chy04g00278 Chy-Chr4:2467905 1.07E-41 dispersed
Chy04g00278 Chy-Chr4:2467905 Chy10g00441 Chy-Chr10:10526539 2.79E-26 dispersed
Chy04g01917 Chy-Chr4:25165989 Chy04g00278 Chy-Chr4:2467905 4.12E-15 dispersed
Chy11g01737 Chy-Chr11:23775281 Chy04g00278 Chy-Chr4:2467905 2.01E-16 dispersed
Chy12g01150 Chy-Chr12:16447708 Chy04g00278 Chy-Chr4:2467905 3.37E-17 dispersed
Chy04g00278 Chy-Chr4:2467905 Chy11g01029 Chy-Chr11:14685040 2.02E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00278 - - cmo:103503730 657.136