Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00282 ATGCAATGCGGGAGTTTTAGAATCATGGTGTTCTGGGTGTTTGGGTATGGCTCATTGGTGTGGAATCCAGGATTTGAATTTGATGAGAAAATTATAGGCTATATCAAGGATTATAAGCGTGTTTTCGACCTCGCATGCATTGATCACAGAGGTACTCCAGAAAATCCTGCTAGGACTCTTACTTTGGAACAGGAAGAAGGAGCTATTTGTTGGGGAGCAGCTTACTGTGTGCGGGGGACTCCTGAAAGGGAAAGAGCTGCAATGGAGTATTTGGAGCATAGAGAATGTGAATATGATCAAAAGACACTTGTTAACTTTTACAAGGAAGAGAACTCTATTGAACCTGCGCTTACAGGAGTAATTGTTTTCACTTCCACTCCGGACAAAGAAGTGAACAAATACTACTTGGGCCCTGCTCCATTAGAGGATATGGCTAGACAAATTGCAACTGCTGTTGGGCCTTGTGGAAACAATAGAGATTATATTTTCATGTTAGAAAAGGCATTATTTAACATAGGTCACGAGGAGGAAATGGTGATCGAGCTTGCTAATGAGGTAAGAAAAGTCCTTGACCTCCTCGAGAATGGAATCTCAAGGGAGAACAAACTGCTCGGAGCAGCACCCCACATAGTACTCAAGTCACACATAGCATCCTTAGAACTGCAACTGCTTCCAGAAGCCATAGCCACAGACTCCTAA 699 43.06 MQCGSFRIMVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEEGAICWGAAYCVRGTPERERAAMEYLEHRECEYDQKTLVNFYKEENSIEPALTGVIVFTSTPDKEVNKYYLGPAPLEDMARQIATAVGPCGNNRDYIFMLEKALFNIGHEEEMVIELANEVRKVLDLLENGISRENKLLGAAPHIVLKSHIASLELQLLPEAIATDS* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2505358 2507754 - Chy4G070000.1 Chy04g00282 224181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00282 232 Gene3D - 9 188 - -
Chy04g00282 232 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 9 116 IPR036568 -
Chy04g00282 232 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 9 232 IPR006840 GO:0003839|GO:0006751
Chy04g00282 232 CDD GGCT_like 13 118 IPR013024 -
Chy04g00282 232 Pfam ChaC-like protein 12 188 IPR006840 GO:0003839|GO:0006751
Chy04g00282 232 PANTHER GAMMA-GLUTAMYLCYCLOTRANSFERASE 2-2 9 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00282 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101209842 460.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00311 Chy-Chr3:3516104 Chy04g00282 Chy-Chr4:2505358 3.16E-76 dispersed
Chy03g00874 Chy-Chr3:11980153 Chy04g00282 Chy-Chr4:2505358 3.88E-66 transposed
Chy03g01216 Chy-Chr3:15273736 Chy04g00282 Chy-Chr4:2505358 3.22E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00282 . . . . . . . . . . . . . . . . . Cpe02g00391 . . . . . . . . . . . . . . Lsi08g00357 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002891 1 3 1 2 0 1 4 1 1 2 2 1 2 2 2 2 1 3 3 2 2 2 1 1 2 0 2 3 4 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00282 Chy_Chr04 FPKM 0.910834 0.625027 7.961662 8.10557 9.268349 8.24469 8.19403 1.789767 2.568433 1.635025