Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00287 ATGGCACCGAGATTGGGATTTTTGTGTCGGTGGGGTAAAGAGAAAGACCCTCAAAAGGGAACTCCGGTGGTTGTAACAATGGAGAAACCTAACTTCTCCGTCGTGGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAGAGTAGAGGCAAAAATGCCAAACAGGTTACATGGGTTCTTCTTCTAAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTCTTACTGTTCTTTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGACAAGGAGTCGCCATTGAAGGCGGGAAGTTATTGTTTCGAGTTATTAGAGTTTTCTTAGTAACTTCTATTGCCATTCTTATTTTTGAAATACTTGCTTATTTCAAAGGCTGGCATTATTTCCAGAATTCCAATCTCCATATTCCTCAAGCTTCTGAGTTGCAAGGATTCCTTCATTCACTCTATGTGGATTGGTTAACTTTTAGAGCAGACTACATTGCTCCCCTCATTCAAACACTGTCTAAATTTTGCATTGTTTTGTTCCTTATTCAATCAGTGGATCGTATGATCCTTTGTTTTGGTTGCCTGTGGATTAAGTACAAAAGAATTGAACCCAAGATTGAAGGGGATCCCTTTAAGTTGGATGACGTGGAAGGAGCTGGGTACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGGGAGGTTTATGAGCAATCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCATTTACTAATTCAAGTTCTTGATGACTCTGATGATGAGAGCATCCAAATGTTAATTAAAGCAGAGGTTGCCAAATGGAGCCAAAAGGGGGTAAATATTGTGTATCGCCATCGATTAGTAAGAACAGGATATAAAGCAGGGAATCTCAAGTCTGCAATGAGTTGCGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAACTGACTGTCCCCCATTTCAAGGATAACCCGGAGCTTGGGTTAGTTCAGGCCAGATGGTCTTTTGTGAACACGGACGAAAACTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAAGCTTTGGAGGAGTCTGGAGGATGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTCTTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATACTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTACTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTCCCCATTTTCATGTCATTACTCAACATTCTTCCGTCCCCAAAATCTTTTCCTTTTATTGTCCCCTACCTTCTTTTTGAGAACACCATGTCCGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACTAAAAAAGCCGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGCGACTCTAAGACAATGAATCAAGCACAGATCTATAGAGGTGCTTCCGAGAGTGAGATTTCCGAGTTGGCTCACTTGAAGGAACGCAAAGAAGTAGTCTCTGCACCTGTCAAAAAAGTTAACACGATATATCGGAAAGAGCTAGCTCTCGCGTTTCTTTTACTCTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTAACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2073 42.74 MAPRLGFLCRWGKEKDPQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLLTVLWALLGTIKKRLIYRQGVAIEGGKLLFRVIRVFLVTSIAILIFEILAYFKGWHYFQNSNLHIPQASELQGFLHSLYVDWLTFRADYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFKLDDVEGAGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDESIQMLIKAEVAKWSQKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNTDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPIFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAESDSKTMNQAQIYRGASESEISELAHLKERKEVVSAPVKKVNTIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS* 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2598661 2601467 + Chy4G070050.1 Chy04g00287 224186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00287 690 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 218 444 IPR029044 -
Chy04g00287 690 Pfam Glycosyl transferase family group 2 319 532 IPR001173 -
Chy04g00287 690 PANTHER - 13 690 - -
Chy04g00287 690 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 526 IPR029044 -
Chy04g00287 690 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 13 690 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00287 - - - csv:101217415 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01422 Chy-Chr1:19725249 Chy04g00287 Chy-Chr4:2598661 0 dispersed
Chy03g01617 Chy-Chr3:18105672 Chy04g00287 Chy-Chr4:2598661 0 dispersed
Chy04g00287 Chy-Chr4:2598661 Chy09g00318 Chy-Chr9:2726245 0 dispersed
Chy04g00287 Chy-Chr4:2598661 Chy07g00213 Chy-Chr7:1721438 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00424 . 229 390 REM Transcription Factor Family AT1G49480 71.0 1.8e-56 216.1
Chy04g00287 . 1 691 REM Transcription Factor Family AT2G24630 77.1 0.0e+00 1079.7
Chy09g00318 . 6 668 REM Transcription Factor Family AT2G24630 68.8 1.1e-264 909.4
Chy07g00213 . 1 707 REM Transcription Factor Family AT2G24630 64.2 6.9e-264 906.7
Chy03g01617 . 5 700 REM Transcription Factor Family AT2G24630 65.8 2.1e-257 885.2
Chy01g01422 . 5 695 REM Transcription Factor Family AT2G24630 62.0 2.9e-246 848.2
Chy04g00287 . 1 691 REM Transcription Factor Family AT2G24630 77.1 0.0e+00 1079.7
Chy09g00318 . 6 668 REM Transcription Factor Family AT2G24630 68.8 1.1e-264 909.4
Chy07g00213 . 1 707 REM Transcription Factor Family AT2G24630 64.2 6.9e-264 906.7
Chy03g01617 . 5 700 REM Transcription Factor Family AT2G24630 65.8 2.1e-257 885.2
Chy01g01422 . 5 695 REM Transcription Factor Family AT2G24630 62.0 2.9e-246 848.2
Chy04g00287 . 1 691 REM Transcription Factor Family AT2G24630 77.1 0.0e+00 1079.7
Chy09g00318 . 6 668 REM Transcription Factor Family AT2G24630 68.8 1.1e-264 909.4
Chy07g00213 . 1 707 REM Transcription Factor Family AT2G24630 64.2 6.9e-264 906.7
Chy03g01617 . 5 700 REM Transcription Factor Family AT2G24630 65.8 2.1e-257 885.2
Chy01g01422 . 5 695 REM Transcription Factor Family AT2G24630 62.0 2.9e-246 848.2
Chy11g00424 . 229 390 REM Transcription Factor Family AT1G49480 71.0 1.8e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00287 Chy_Chr04 FPKM 12.033259 12.5518 6.580614 7.732338 1.478548 1.909422 2.104226 1.718869 2.015675 2.277764