Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00288 ATGGAACACAACAAACCCAAATTCGTCAGGTTTTATTCCAATCTGGAGAAAAACGATGGGAATAAGAAGAAGGGTATTGAGTTCCCATTGCCTGTTTTCAAAATGGGGACGAAATTAGAGAGTGAAAGTAAAGTTGATTCTTCGCAAGAACAGAAGAATAAGAGGATACTTAACCCTGAAAGTGAAAGGATTTTGAGATGGAACAGGGTTTTTTTATTCTCTTGTTTGACTGCTCTTTTTGTAGATCCCTTGTTCTTCTACCTTCCTTCAGTGATTCATCATAACAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTCTTTTATCTGTTGCATATGATTTTGAAGTTCCGCATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGCAAAGGTGAACTTGTTACTGATCCTAAGAAGATTGCTGAACGCTATTTGAAGTCTGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTATTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGAGCTGCATATAACCTTGTATTGTACATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGGAGGGAATTCAGTCCTATGAAATGCCATCTTGACTATCTGGATTGTGGTACTTTAAATGATGTGGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGACGTCGTTTTCAATTACGGGATATTTGCGGATGCGATCACAAAAAATGCAGCATGGCGTCGCTTCAAAAGGAGAATCATAGCGAAGTCACTCAGCTTACAGGAGTCTTTCTCGTTGACTCCCGAGAAGCCAGTGGTCGATGAAGCTGAACAAGAAGGAGAGGAAGGACATAATACTCCACGCTCAAGTTACTCTCAAGCAAAACAAAACCTTGGTGTCACCATTTTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTCAAGGATGTTAACTTATCCAAACTTCGAAAGCCCGATGAGCCTGACTTTTCTGAAGAACCAGATGATTAA 1266 40.28 MEHNKPKFVRFYSNLEKNDGNKKKGIEFPLPVFKMGTKLESESKVDSSQEQKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKGELVTDPKKIAERYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCHLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFADAITKNAAWRRFKRRIIAKSLSLQESFSLTPEKPVVDEAEQEGEEGHNTPRSSYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2602983 2607584 - Chy4G070060.1 Chy04g00288 224187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00288 421 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 324 418 - -
Chy04g00288 421 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 325 - -
Chy04g00288 421 MobiDBLite consensus disorder prediction 353 375 - -
Chy04g00288 421 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 324 418 - -
Chy04g00288 421 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 37 325 - -
Chy04g00288 421 Pfam Ion transport protein 67 297 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy04g00288 421 MobiDBLite consensus disorder prediction 399 414 - -
Chy04g00288 421 MobiDBLite consensus disorder prediction 399 421 - -
Chy04g00288 421 SUPERFAMILY Voltage-gated potassium channels 63 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02176 Chy-Chr2:25975510 Chy04g00288 Chy-Chr4:2602983 5.71E-130 dispersed
Chy02g02177 Chy-Chr2:25981072 Chy04g00288 Chy-Chr4:2602983 1.33E-26 dispersed
Chy02g02569 Chy-Chr2:28909271 Chy04g00288 Chy-Chr4:2602983 2.14E-118 dispersed
Chy04g00288 Chy-Chr4:2602983 Chy11g00817 Chy-Chr11:11708053 3.08E-94 dispersed
Chy04g00288 Chy-Chr4:2602983 Chy04g01471 Chy-Chr4:21377399 1.80E-127 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00288 K05391 - csv:101211072 663.299