Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g00294 | ATGGCGGTCGATCTGATGAGTTTCCCGAAGATGGATGATCAAATCGCTATACAAGAGGCAGCATCGCAAGGTTTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCTTCAAACCATGTCGATTGTTCTGACCTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTTATTTCTCTCCTCAATCGAACCGGTCACGCCAGATTCCGGCGAGGTCCGGTTTCTTCGACTTCCTCATCGTCTTCCGGTTCATCCGCTCATCTCTCTCAAAATCAAGCCATGACTCTCACTCCTACTCCGTTTACTTCACCGCCGAATGTTCCTGCTCTGCCGTTTACCGCTCCGGCCACGGTCGCTCAGCCACAGACAAAAGTCGTTGCCACTGCCGCGAACTTTCTATCTCAGCCTCAGAGTATGACTCTCGATTTCACTAGACCGAATATTCTGAACTCTAACCCTAAGGGAGCCGATTTGGAATTCTCTAAAGAAACCTTCAGTGTCTCTTCGAGCTCATCGTTTATGTCCTCTGCTATCACCGGAGATGGAAGTGTATCTAACGGAAAATTAGGAACGTCGATCTTTTTAGCACCAGCGCCAACTGCTTCCGGCGGTAAGCCTCCGCTCTCGGCGGCACCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTATCCGGGAAATTCTCCGGATCAACATCAATTTCCGGGAAGTGCCATTGCTCGAAGAGAAGAAAAAATCGGATGAAGAAGACCATCCGAGTCCCGGCTATCAGTTCAAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAGCCGATCAAAGGATCTCCATACCCGCGGGGGTATTATAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCAGCGATGTTGATTGTAACGTACGAAGGGGAGCATCGCCATACACAGAGCTCGTTACCGGAAAATATGGCGGCGGCTGGAGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA | 1053 | 49.1 | MAVDLMSFPKMDDQIAIQEAASQGLKSMEHLIRLLSHKQSSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSQNQAMTLTPTPFTSPPNVPALPFTAPATVAQPQTKVVATAANFLSQPQSMTLDFTRPNILNSNPKGADLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSISGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAAGGVALVFESS* | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2650264 | 2651870 | + | Chy4G070120.1 | Chy04g00294 | 224193 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g00294 | 350 | Pfam | Plant zinc cluster domain | 217 | 268 | IPR018872 | - | |
Chy04g00294 | 350 | Gene3D | WRKY domain | 249 | 323 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Chy04g00294 | 350 | SUPERFAMILY | WRKY DNA-binding domain | 268 | 330 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Chy04g00294 | 350 | Pfam | WRKY DNA -binding domain | 272 | 328 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy04g00294 | 350 | MobiDBLite | consensus disorder prediction | 74 | 103 | - | - | |
Chy04g00294 | 350 | ProSiteProfiles | WRKY domain profile. | 265 | 331 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy04g00294 | 350 | PANTHER | WRKY TRANSCRIPTION FACTOR 17-RELATED | 7 | 349 | - | - | |
Chy04g00294 | 350 | SMART | WRKY_cls | 270 | 330 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy04g00294 | 350 | MobiDBLite | consensus disorder prediction | 72 | 107 | - | - | |
Chy04g00294 | 350 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 7 | 349 | IPR044810 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g00294 | Chy-Chr4:2650264 | Chy11g00548 | Chy-Chr11:6055556 | 4.22E-71 | dispersed | |
Chy04g00294 | Chy-Chr4:2650264 | Chy02g00896 | Chy-Chr2:5782349 | 1.89E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17805 | PF03106 | WRKY | 6.70E-26 | CL0274 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g00294 | - | - | csv:101218039 | 669.077 |