Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00294 ATGGCGGTCGATCTGATGAGTTTCCCGAAGATGGATGATCAAATCGCTATACAAGAGGCAGCATCGCAAGGTTTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCTTCAAACCATGTCGATTGTTCTGACCTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTTATTTCTCTCCTCAATCGAACCGGTCACGCCAGATTCCGGCGAGGTCCGGTTTCTTCGACTTCCTCATCGTCTTCCGGTTCATCCGCTCATCTCTCTCAAAATCAAGCCATGACTCTCACTCCTACTCCGTTTACTTCACCGCCGAATGTTCCTGCTCTGCCGTTTACCGCTCCGGCCACGGTCGCTCAGCCACAGACAAAAGTCGTTGCCACTGCCGCGAACTTTCTATCTCAGCCTCAGAGTATGACTCTCGATTTCACTAGACCGAATATTCTGAACTCTAACCCTAAGGGAGCCGATTTGGAATTCTCTAAAGAAACCTTCAGTGTCTCTTCGAGCTCATCGTTTATGTCCTCTGCTATCACCGGAGATGGAAGTGTATCTAACGGAAAATTAGGAACGTCGATCTTTTTAGCACCAGCGCCAACTGCTTCCGGCGGTAAGCCTCCGCTCTCGGCGGCACCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTATCCGGGAAATTCTCCGGATCAACATCAATTTCCGGGAAGTGCCATTGCTCGAAGAGAAGAAAAAATCGGATGAAGAAGACCATCCGAGTCCCGGCTATCAGTTCAAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAGCCGATCAAAGGATCTCCATACCCGCGGGGGTATTATAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCAGCGATGTTGATTGTAACGTACGAAGGGGAGCATCGCCATACACAGAGCTCGTTACCGGAAAATATGGCGGCGGCTGGAGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA 1053 49.1 MAVDLMSFPKMDDQIAIQEAASQGLKSMEHLIRLLSHKQSSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSQNQAMTLTPTPFTSPPNVPALPFTAPATVAQPQTKVVATAANFLSQPQSMTLDFTRPNILNSNPKGADLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSISGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAAGGVALVFESS* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2650264 2651870 + Chy4G070120.1 Chy04g00294 224193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00294 350 Pfam Plant zinc cluster domain 217 268 IPR018872 -
Chy04g00294 350 Gene3D WRKY domain 249 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy04g00294 350 SUPERFAMILY WRKY DNA-binding domain 268 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy04g00294 350 Pfam WRKY DNA -binding domain 272 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g00294 350 MobiDBLite consensus disorder prediction 74 103 - -
Chy04g00294 350 ProSiteProfiles WRKY domain profile. 265 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g00294 350 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 349 - -
Chy04g00294 350 SMART WRKY_cls 270 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g00294 350 MobiDBLite consensus disorder prediction 72 107 - -
Chy04g00294 350 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 349 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00294 Chy-Chr4:2650264 Chy11g00548 Chy-Chr11:6055556 4.22E-71 dispersed
Chy04g00294 Chy-Chr4:2650264 Chy02g00896 Chy-Chr2:5782349 1.89E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17805 PF03106 WRKY 6.70E-26 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00294 - - csv:101218039 669.077