Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00296 ATGCTACCCATCGCATCATTCTCCTCTCGTCAATTGGCTTTAAATACATCCAACTCAACGAACGTATTTTCTTGTTCGCTTCCTTCTCGCACGGCCACCTCCCGCCGTCGGAGAGTCTCTCCTCGGAGTCCTAATCTCAAGCGGTTAACCTCTCGTGTCGTCAGACTCACCCGTCGAAAGCAGCTCCACCAGGTATTTGAGGAAATTGAGATTGCCAAGAGACGTTATGGAAAGCTGAATACAATTGTTATGAATGCGGTCTTGGAAGCTTGTGTTCACTGTGGTGATATTGATTTAGCTCTGAGGACTTTTAATGAAATGTCTAAACCAGATAATTGTGGCCTTGACAATGTCAGTTATGGCACGCTATTAAAGGGTTTGGGCGAAGCTCGCAAGATTGATGAAGCATTTCAATTACTTGAATCTGTGGAAGAAGGAACTGCTATCGGAGGTCCAACATTGTCAGCACCACTTATATATGGTCTTCTAAATGCTTTAATCAAAGCAGGAGACATGCGCCGTGCCAATGGTCTAATAGCACGATATGGGTTCTTACTTCGTGAAGGAGGCAATCTCTCAATATCAGTTTACAACTTATTGATGAAGGGGTACATAAGCTCAGGTGTTCCTCAAGCTGCTTTGGCCATGTACAATGAGATGCTAAATCTGGAGTTGAAACCTGATAGGCTCACATATAATACATTAATATCTGCTTGTGTGAAGATTAACAAACTGGACGCGGCAATGTATTTTTTCGAGGAAATGAAGGAACGAGCTGATAAGTACGATCAGGAAGATATTTTTCCTGATGTTGTGACTTATACTACTTTACTTAAGAGTTTTGGGATTCTGAGAGATGTCCGTCTTGTTCACAAAATTGTGCTGGAAATGAAGTCTTGTCGTGGTTTGTCAATTGATCGAACTGCATACACTGCAATGATTGATGCTTTGGTTAACTGTGGCTCTATTAATGGTGCTCTTTCTTTATTTGGGGAATTATTGAAGCTTTCTGGATGGAATTTGGAGTTACGGCCAAAGCCACATCTCTATCTCACTCTTATGAGAGTTTTTTCTAGTAGAGGAGATTATAGAATGGTCAAATGTTTGCATAGACGCATGTGGCTGGACTCCTCTGGAACTATTTCCCTTGGATATCAGGAAGAAGCAGATCATCTTCTCATGGAGGCAGCTTTAAATGACAATCAGATTGATGTGGCAATAGAGAAACTTTCAACAATTATTAAGAAATGGAAGGGAATCTCATGGGCTAGTCGAGGTGGCAGTGTTGCTCTGCGTATTGAAGCATTGTTGGGACTCACCAAATCTTTCTTTAGTCCTTGCATATTTCCTCGGGTAAATCTGGGTGCACCAATTGAGAGTGTCATGATGCCATTTAAAGCCGTTCAGCCATTAAATGGAAGCTTACTGTTGAAGGAGGTGGTTATGCGTTTCTTTGACAAATCAGTTGTGCCTATCATAGACGACTGGGGTAGATGCATTGGACTACTTCACCGAGAAGACTGTACTGAGTTGGATGCTCCCCTTTGGAAAATGATGAGAAGCCCTCCTCCTGGTGTAACAACTACAGCATCGATTGGACATGTTGCGAATCTAATTCTGCAAAAGAGGTACAAAATGGTTGTTGTTGTAAGGCATAGCAAGTTTTGTACGTATTATGGCTCGAGTTTGAGGGCTCTTGGTGTTTTTACTATCGAGCAATTGTATGGCTTTATTTCTCCCATTCCAATTCAGCATCGGCCAAACATCTCTCATTTGATCAAGTGCAAAAGCAAAAGTGCTTCTTGTAGACAAGGCTATAGCTTAGCAGATTTCCAAGTTGAGATTAATAGTTGTTGTTCAGCGCTTAAGATATTTCAGATTCTTGTGCTAGATTGGTTTATAGACTGCAAAGAGTTTCTGATGGATGGGTATTCTAGCAAAAGAGTTCATGTGGGAATTGTTTCTAGGAAGGGACCTGGTGTAGTTTTGAGGGATAACATGAAGCACAGGGATCAAAGTAATAAATGCAGCAATCGCCCTGGCTGCACTGGCAGGATATGCTCCAGTAGTGGTGCACAAGTTGGTTGTTCGAGTAAATTCAGCTCAAAAAGACGATTCCACAGCTCAAGTGGTAAAGAAGGTTTTGGAAGTTCCTCTGGAATCCAAAATCTCAGGAAATCTTTTCCAGATCCATTTGGAAAGTTATCATCTAAGCTTGAAACAGATTCATCTGAAAGTGATAGCATTCAGGATGACTTGGAAGAACTGGAATTCATCTCACCTCATGGATTGTTCCATACAGGGCTTCATGCGAAATCTGAAAGTCCAGTGCTCGCTAATGCCATGCTGATGGAAAGGGGAAGCTGCAGTACGGACTCTAGCAATATATCTAAGAGAGTCTCCATTCAAAGTTATGAAGTGGACAATGAAGATCCTCATGCATCAATGAGGCCTAGAAGTCTTTGCCAGAAATCAAATGGTAGTTCCAGTAGGTACAATTCAAGAAACCTCACATGTGATTCTGTATCTGAAGTAATTCCATCAAATAATTCTTTACTGGAGTCAAACCTTGTGAGAAGAAAGAATGTAATGAAGAAGATGGCATTTGATGGTGAGAATAGTTCCAGTTCTAGAGGAAAGAAGGCGAGTGGAACTTCCCAAGGACAAAAGTGTATCTACCGGCATGGTATCTCTATTTCTGATCAAATACCAGGTCGAAACGTGTTTCACAAGAAAAATATTCTTTCATCACATGGGACTCGAAGTTTGACTAGTGTATGTAGTGGGGGAAAGCATTCTTACCAAGGCATTAGTGACAATTTGTCACTGCAGGATTCACTAGCAACGACTTCATGGAGGCCTCAGACTAATGTCTCCAGTTCCTCAAATGCTTCTACTTCACTTCAGTTATCTTCAGAATCACACTCCAGGCAGCACACTACTTCCCCCAAACCAGAAGGCTATAGTCAAAGGCTACATGACATTAGACAAGCTACTTCTGCAGAAGTTGGTCTTTCAAGCACTTCAACAAATGCAAGCCGTTTTAGATGCCACAATGTCGATGGAATTGCTGAGGTACTATTGGCGTTGGAGAGAATTGAACAAGAGGAGGAGCTAACTTATGAGCAAGCCATTCTTCTTGAGACGAGTGTGTTCCTCAATAGCCTGAACATCTATGATCAGCACAGAGACATGAGACTTGACATTGATAACATGACATATGAGCAACTTTTAGATTTAGAAGAGAAAATGGGGACAGTAAGCACAGCACTGTCTGAAGAAGCGCTGACAAAATGCCTTAATAGAAGCATCTATCAGTCCAAACCTAAAGGAGTAACAACCATGGATCCTATTGGGGATCTGAGTGATGTCAAATGCTGTATTTGTCAGGAAGAATATGTGAGTGGAGATGAAGTTGGGAGACTGCAATGTGAGCATCAGTATCATGTAGCATGCATTCAACAATGGTTGAGGTTGAAGAACTGGTGCCCCATTTGTAAATCATCAGCAGCAACTTCTCACCCTTTCAGATGA 3534 41.74 MLPIASFSSRQLALNTSNSTNVFSCSLPSRTATSRRRRVSPRSPNLKRLTSRVVRLTRRKQLHQVFEEIEIAKRRYGKLNTIVMNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKIDEAFQLLESVEEGTAIGGPTLSAPLIYGLLNALIKAGDMRRANGLIARYGFLLREGGNLSISVYNLLMKGYISSGVPQAALAMYNEMLNLELKPDRLTYNTLISACVKINKLDAAMYFFEEMKERADKYDQEDIFPDVVTYTTLLKSFGILRDVRLVHKIVLEMKSCRGLSIDRTAYTAMIDALVNCGSINGALSLFGELLKLSGWNLELRPKPHLYLTLMRVFSSRGDYRMVKCLHRRMWLDSSGTISLGYQEEADHLLMEAALNDNQIDVAIEKLSTIIKKWKGISWASRGGSVALRIEALLGLTKSFFSPCIFPRVNLGAPIESVMMPFKAVQPLNGSLLLKEVVMRFFDKSVVPIIDDWGRCIGLLHREDCTELDAPLWKMMRSPPPGVTTTASIGHVANLILQKRYKMVVVVRHSKFCTYYGSSLRALGVFTIEQLYGFISPIPIQHRPNISHLIKCKSKSASCRQGYSLADFQVEINSCCSALKIFQILVLDWFIDCKEFLMDGYSSKRVHVGIVSRKGPGVVLRDNMKHRDQSNKCSNRPGCTGRICSSSGAQVGCSSKFSSKRRFHSSSGKEGFGSSSGIQNLRKSFPDPFGKLSSKLETDSSESDSIQDDLEELEFISPHGLFHTGLHAKSESPVLANAMLMERGSCSTDSSNISKRVSIQSYEVDNEDPHASMRPRSLCQKSNGSSSRYNSRNLTCDSVSEVIPSNNSLLESNLVRRKNVMKKMAFDGENSSSSRGKKASGTSQGQKCIYRHGISISDQIPGRNVFHKKNILSSHGTRSLTSVCSGGKHSYQGISDNLSLQDSLATTSWRPQTNVSSSSNASTSLQLSSESHSRQHTTSPKPEGYSQRLHDIRQATSAEVGLSSTSTNASRFRCHNVDGIAEVLLALERIEQEEELTYEQAILLETSVFLNSLNIYDQHRDMRLDIDNMTYEQLLDLEEKMGTVSTALSEEALTKCLNRSIYQSKPKGVTTMDPIGDLSDVKCCICQEEYVSGDEVGRLQCEHQYHVACIQQWLRLKNWCPICKSSAATSHPFR* 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2666617 2679753 + Chy4G070140.1 Chy04g00296 224195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00296 1177 MobiDBLite consensus disorder prediction 869 888 - -
Chy04g00296 1177 SUPERFAMILY CBS-domain pair 456 552 IPR046342 -
Chy04g00296 1177 SMART ring_2 1126 1166 IPR001841 -
Chy04g00296 1177 Pfam PPR repeat family 194 241 IPR002885 -
Chy04g00296 1177 Pfam PPR repeat family 80 127 IPR002885 -
Chy04g00296 1177 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Chy04g00296 1177 PANTHER OS09G0431600 PROTEIN 19 581 IPR044781 -
Chy04g00296 1177 SUPERFAMILY RING/U-box 1117 1171 - -
Chy04g00296 1177 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 341 IPR002885 -
Chy04g00296 1177 Pfam PPR repeat 309 335 IPR002885 -
Chy04g00296 1177 ProSiteProfiles Zinc finger RING-type profile. 1126 1167 IPR001841 -
Chy04g00296 1177 CDD CBS_pair_SF 477 550 - -
Chy04g00296 1177 Gene3D Tetratricopeptide repeat domain 35 183 IPR011990 GO:0005515
Chy04g00296 1177 Gene3D Tetratricopeptide repeat domain 184 261 IPR011990 GO:0005515
Chy04g00296 1177 Gene3D Tetratricopeptide repeat domain 262 435 IPR011990 GO:0005515
Chy04g00296 1177 MobiDBLite consensus disorder prediction 953 990 - -
Chy04g00296 1177 Pfam Pentatricopeptide repeat domain 260 299 IPR002885 -
Chy04g00296 1177 Pfam Ring finger domain 1125 1167 IPR001841 -
Chy04g00296 1177 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Chy04g00296 1177 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Chy04g00296 1177 TIGRFAM PPR: pentatricopeptide repeat domain 231 258 IPR002885 -
Chy04g00296 1177 TIGRFAM PPR: pentatricopeptide repeat domain 196 228 IPR002885 -
Chy04g00296 1177 TIGRFAM PPR: pentatricopeptide repeat domain 309 335 IPR002885 -
Chy04g00296 1177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1084 1172 IPR013083 -
Chy04g00296 1177 MobiDBLite consensus disorder prediction 868 888 - -
Chy04g00296 1177 MobiDBLite consensus disorder prediction 819 834 - -
Chy04g00296 1177 MobiDBLite consensus disorder prediction 807 834 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00296 - - - csv:101218517 1118.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01193 Chy04g00296 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01557 Chy-Chr3:17728854 Chy04g00296 Chy-Chr4:2666617 1.64E-35 dispersed
Chy04g00296 Chy-Chr4:2666617 Chy07g00954 Chy-Chr7:14136914 1.08E-24 dispersed
Chy12g01417 Chy-Chr12:18249762 Chy04g00296 Chy-Chr4:2666617 3.16E-29 transposed
Chy03g01193 Chy-Chr3:15068126 Chy04g00296 Chy-Chr4:2666617 5.03E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00296 Chy_Chr04 FPKM 0.230297 0.27765 0.53617 0.514011 1.324545 0.776166 1.581877 0.0 0.0 0.0