Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00306 ATGTCATCAGGGTTTTCTCCACCAAGTGACAATGGCGAAAATAATGCTGGAGCAGGAATATATATACTTTTGAGCTTTGTGATTTTTGCTGTCATTGGTGCAATATCTTGCTGCTTTGCTAGGAAGGTGAGGCAGGGTATTGTAAGAGAGTTGCAAACTGTAGTTGCCTCAGCTACACCAAATTTGACACATTCACCAAATGTAGTTCAGATTTGGGAAATCGATCAACCAACTATGGAGAAGTTCATCCGAGAAATGGCGGAAGAAAGGCCTGTAAGGTTCACTCCTCAACAACTGTATTGTTTCACGAGCAATTATTCCACACCACTTGGGTCAGGAGGATTTGGTTCGGTCTACAAAGGTCAGTTTCCAAATGGGGTGAAGATTGCTGTGAAGGTTCTGAAGAGGAACGCAGATAGACAGGCAGAGGAACAATTTATGGCTGAGGTAGGAACAATTGGAAGAACTTATCATATAAACTTGGTTAGGCTTTATGGTTTTTGTTATGATCAATATATGGGTGCATTAGTATTTGAGTATATGGAAAATGGATCCTTGGATAGATATTTGTTTGGCAAAAATCAAGATATTGATTGGAGAAAGTTACATGATGTAGCCATTGGGACTGCTAAAGGTCTTGCTTACTTGCATGAGGAATGCCAACAGAGAATCATTCATTATGATATAAAGCCGGCTAACATCTTGTTGGATGCTAATTTCTCTCCCAAAGTTGGTGATTTTGGACTTGCCAAGCTTTGCAACAGGGATATAACTCACATGTCCCTCACTGGTTATCGAGGCACGCCGGGATATTCGGCTCCAGAATTCTTGTTCTATAATTATCCGATAACGCACAAATGCGATGTGTATAGTTTCGGAATGGTATTGTTTGAGATTGTTGGAAGAAAAAGAAATGCTGGAGTTACAGATTCTGGGAACCCTGATTGGTTGCCGCAACATGTTTGGGATAATTATGAAAAGGATAAACTAGAAGAGTTCACTCTAATGTGTGGCATTGAAGAGGACAATAAAGAGAGAGCAAACAGAATGTGTGAGGTTGCTTTGTGGTGCGTTCAAGACTCTCCGGACGACCGGCCGCCGATGAGTACAGTGGTGAGGATGCTTGAAGGAGGAGTAGAAATAATGCCACCACCAAAGCCATTTCTTTACTTGCATTCAACTGCAAAAAGAAACGTGCAACAAACTAGTAATAGTTCAGATTATTCAACTTTCAATGAAGAAAGTGGGTCAGTATGGTACAAGGACACTCCAATAATGAAGAAGTACGAAATACAGATAGCTAGTTCTTGA 1311 40.73 MSSGFSPPSDNGENNAGAGIYILLSFVIFAVIGAISCCFARKVRQGIVRELQTVVASATPNLTHSPNVVQIWEIDQPTMEKFIREMAEERPVRFTPQQLYCFTSNYSTPLGSGGFGSVYKGQFPNGVKIAVKVLKRNADRQAEEQFMAEVGTIGRTYHINLVRLYGFCYDQYMGALVFEYMENGSLDRYLFGKNQDIDWRKLHDVAIGTAKGLAYLHEECQQRIIHYDIKPANILLDANFSPKVGDFGLAKLCNRDITHMSLTGYRGTPGYSAPEFLFYNYPITHKCDVYSFGMVLFEIVGRKRNAGVTDSGNPDWLPQHVWDNYEKDKLEEFTLMCGIEEDNKERANRMCEVALWCVQDSPDDRPPMSTVVRMLEGGVEIMPPPKPFLYLHSTAKRNVQQTSNSSDYSTFNEESGSVWYKDTPIMKKYEIQIASS* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2732288 2733689 - Chy4G070240.1 Chy04g00306 224205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00306 436 SUPERFAMILY Protein kinase-like (PK-like) 82 375 IPR011009 -
Chy04g00306 436 Pfam Protein tyrosine and serine/threonine kinase 108 375 IPR001245 GO:0004672|GO:0006468
Chy04g00306 436 SMART serkin_6 104 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00306 436 PANTHER RUST RESISTANCE KINASE LR10-RELATED 52 432 IPR045874 GO:0004672
Chy04g00306 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Chy04g00306 436 Gene3D Phosphorylase Kinase; domain 1 76 180 - -
Chy04g00306 436 ProSiteProfiles Protein kinase domain profile. 104 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00306 436 Gene3D Transferase(Phosphotransferase) domain 1 181 381 - -
Chy04g00306 436 PANTHER RECEPTOR SERINE/THREONINE KINASE 52 432 - -
Chy04g00306 436 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00306 - - - csv:101219459 881.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00302 Chy-Chr4:2721312 Chy04g00306 Chy-Chr4:2732288 1.20E-06 dispersed
Chy04g00306 Chy-Chr4:2732288 Chy06g01280 Chy-Chr6:11752691 3.08E-80 dispersed
Chy04g00305 Chy-Chr4:2727337 Chy04g00306 Chy-Chr4:2732288 0 tandem
Chy04g00306 Chy-Chr4:2732288 Chy04g00307 Chy-Chr4:2737725 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71171 PF07714 PK_Tyr_Ser-Thr 4.10E-46 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00306 Chy_Chr04 FPKM 7.021331 7.331559 0.163479 0.351662 1.047082 1.061448 1.22154 0.240987 0.263359 0.329519