Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g00308 | ATGCCGGGTCTAACTTGTAATGCCTGTAACAAAGAATTTCTAGACGTCGATGAGCAAAAGCTTCACTACAAATCCGAATGGCATCGATATAATCTTAAGCGCAAGGTTGCTAATGTTCCTGGAGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCAGCAGCACAAGAGAATGCCAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCACATGCCCAACACCTTAAATCTAGGAGTCATATCATTCGAGCTTCGCAAGGAACACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCCCAGCGAATTTCCAACAAGGCACCCCAACAAAGTGAGGAGGAAGAGAGTGAGGATGAGTGGGAAGAAGTTGATCCCGATGAAGACATGGTTGATGGAAATGAGGATGAGAATGAGGATGATGATACTGATGCCATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGAGAGCTGCATGGTCCACATGCACAAGAAACATGGATTCTTTATTCCTGATATTGAATATTTGAAGGATCCAAAAGGCTTCCTTACATATGTCGGCCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAGAGTGCATTATGGTGATGAAGACGAGAATGAAGAAGTAGAATTGGAGGAATTTTATGATTACAGCAGCAGTTATGTCGATGGAAGTGGCAACCAGCTCGTACCATCAGGTGCTCAAGACAATACTGTCCAATTTGGTAGTGGTGGAGCAGAGCTCATCTTAGTTCAAGGAAGCAGCGAACGACAATCGACTAAAACACTCGGTTCCAGACAATTTCTACGTTATTATCGCCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATTACTGCTGTATTGGCAGCCAGGTACAGGAGTATGGGATTGGCAACTGTCCAATCGAGAGAAAAGATGATCAGGATGAAGGTGATGAAAGAAATGAATCGAACCGGGTTGGAAGCAATGCGCACCAAAATCGGATTGAAGAACAACGTAATCCGAAACCTGCCTAAGAATGTTCCACACTAG | 1188 | 43.69 | MPGLTCNACNKEFLDVDEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGTHDQEVEKPIIKPLPQRISNKAPQQSEEEESEDEWEEVDPDEDMVDGNEDENEDDDTDAIEVDLDPSCCFMCDLEHDTIESCMVHMHKKHGFFIPDIEYLKDPKGFLTYVGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCRVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPSGAQDNTVQFGSGGAELILVQGSSERQSTKTLGSRQFLRYYRQKPRPSPANDAAITAVLAARYRSMGLATVQSREKMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPH* | 396 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2741668 | 2744318 | + | Chy4G070260.1 | Chy04g00308 | 224207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g00308 | 395 | PANTHER | ZINC FINGER PROTEIN-RELATED | 1 | 394 | - | - | |
| Chy04g00308 | 395 | Pfam | C2H2 type zinc-finger (2 copies) | 169 | 270 | IPR041661 | - | |
| Chy04g00308 | 395 | MobiDBLite | consensus disorder prediction | 98 | 156 | - | - | |
| Chy04g00308 | 395 | MobiDBLite | consensus disorder prediction | 127 | 156 | - | - | |
| Chy04g00308 | 395 | SUPERFAMILY | beta-beta-alpha zinc fingers | 153 | 205 | IPR036236 | - | |
| Chy04g00308 | 395 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 71 | 93 | IPR013087 | - | |
| Chy04g00308 | 395 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
| Chy04g00308 | 395 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
| Chy04g00308 | 395 | SMART | c2h2final6 | 69 | 93 | IPR013087 | - | |
| Chy04g00308 | 395 | SMART | c2h2final6 | 167 | 190 | IPR013087 | - | |
| Chy04g00308 | 395 | SMART | c2h2final6 | 218 | 245 | IPR013087 | - | |
| Chy04g00308 | 395 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 394 | IPR040025 | - | |
| Chy04g00308 | 395 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
| Chy04g00308 | 395 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676|GO:0008270 | |
| Chy04g00308 | 395 | SMART | ZnF_U1_5 | 66 | 100 | IPR003604 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g00833 | Chy-Chr3:11530351 | Chy04g00308 | Chy-Chr4:2741668 | 1.14E-06 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g00308 | K14816 | - | csv:101219700 | 719.924 |