Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00309 ATGGGGGAATCAACAGCAAAAATACCTGTGACTAAGGAAGAACCAAAGGGGCATAAGCTTTGGCGATGCTCGATTTGCACTTACGACAACGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCATCCCTTTGGACAACATCAGAAATACTCGAGATGATAGAACAGCAGCCAGCCACAATGACTTCAACTCTTCAATATTATCTTCAGACACCGCTAAGATATCTGCAAACAATGCAGCATTGACTTCAAAAAGTGCACATAGCGCGTCTACTTTATTGCAAATGAGTAAATCAGGCAATATAGGAGATAAACAGTTGAATACCAAAGGTTCAGCCAACTCACGGACCTCAATTGGAAAAAATACAATGGTTATTGAAGAACACAATACATCAATTAGTGTAACAAAAAATTTACCATCACGTGATAACCGGTCATCAAGCACTTCCTCATCAAAGTCCGCAGGCAAATTTGACAGCATGGATGAGAGCAGCAACCCTTCTGTAGAGTGGGAAAAGTCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTCCTAAATGTTAAATCTGCCTATGCAAATTATATTAGTGGGATTGGAAAAACATCAAATCCGCAGTATAAGCATGATAAGTGGATGCTACCTGATAAGGCTGTAGATACGCTGACTCAGCTGAATCTTGCCATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGATTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAATCAATGGGCAAGGGTTCTTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAGGAAAGGGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTTTTTTGATTCCAAAAGATATCATATTGTTGTGCTCGATTCCCCTGGCCATAAAGATTTTGTTCCAAACTTGATATCTGGGGCCACACAAGCTGATGCTGCAGTTCTTGTTATCGATGCATCTGTTGGTGCATTTGAGGCCGGTATGGACAGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAATGATCGATATGAATTTATTAAGCTGCAACTGGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTGGTGACTGCCCCTTCTGATGTACATTTTTTATCCTGGTACCGTGGACCTAATCTTTTGGAGGCGATCGATTCTCTTCAACCACCCACTCGAGAATTCTCTAAGCCACTGCTAATGCCAATATGCGACGTTGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGAAAATTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGCAACCGTGCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATCGCAAGAGCGGGGGACAACGTGACTGTTACTCTACAAGGAGTTGAAGCAAGTAGCGTGATGTCCGGTGGTGTCCTATGCCATCCTGATTTCCCCGTTGCTGTTGCAAAACATTTGGAATTGAAGATTCTCACCTTGGAATATGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCATGTGAAGGAGGCTGCTAGAGTTGCAAGAATAGTCTCATTGCTCGATTCAAAGACGGGGAAGGTCACGAAAAAGGCACCACGCTGTCTCAGTGCTAAACAAAGCGCAGTGATTGAGGTCGTTTTACAAAGCTCTGTTTGCGTCGAAGCATTCTCAACTAGTCGAGCACTTGGTCGGGTATTTCTGAGAACGATGGGAAGAACCATAGCCGTCGGCATTGTGACCCAACTAATCGGAGGCTCTCAATAA 1968 42.99 MGESTAKIPVTKEEPKGHKLWRCSICTYDNEDSFSVCDICGVLRIPLDNIRNTRDDRTAASHNDFNSSILSSDTAKISANNAALTSKSAHSASTLLQMSKSGNIGDKQLNTKGSANSRTSIGKNTMVIEEHNTSISVTKNLPSRDNRSSSTSSSKSAGKFDSMDESSNPSVEWEKSQSLAGGLNNMVLNVKSAYANYISGIGKTSNPQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSMGKGSFAYAWALDESAEERERGITMTVGVAFFDSKRYHIVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSNDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVHFLSWYRGPNLLEAIDSLQPPTREFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVTLQGVEASSVMSGGVLCHPDFPVAVAKHLELKILTLEYATPILIGSQLEIHIHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSSVCVEAFSTSRALGRVFLRTMGRTIAVGIVTQLIGGSQ* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2745441 2752695 - Chy4G070270.1 Chy04g00309 224208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00309 655 Pfam Elongation factor Tu GTP binding domain 227 444 IPR000795 GO:0003924|GO:0005525
Chy04g00309 655 Gene3D - 218 448 IPR027417 -
Chy04g00309 655 SUPERFAMILY Translation proteins 446 541 IPR009000 -
Chy04g00309 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 458 IPR027417 -
Chy04g00309 655 PANTHER OS04G0595300 PROTEIN 56 651 - -
Chy04g00309 655 MobiDBLite consensus disorder prediction 100 173 - -
Chy04g00309 655 Gene3D Translation factors 545 652 - -
Chy04g00309 655 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 547 651 IPR009001 -
Chy04g00309 655 ProSitePatterns Zinc finger RanBP2-type signature. 21 40 IPR001876 -
Chy04g00309 655 PRINTS GTP-binding elongation factor signature 287 295 IPR000795 GO:0003924|GO:0005525
Chy04g00309 655 PRINTS GTP-binding elongation factor signature 228 241 IPR000795 GO:0003924|GO:0005525
Chy04g00309 655 PRINTS GTP-binding elongation factor signature 307 317 IPR000795 GO:0003924|GO:0005525
Chy04g00309 655 PRINTS GTP-binding elongation factor signature 368 377 IPR000795 GO:0003924|GO:0005525
Chy04g00309 655 PRINTS GTP-binding elongation factor signature 323 334 IPR000795 GO:0003924|GO:0005525
Chy04g00309 655 Pfam Elongation factor Tu C-terminal domain 548 650 IPR004160 -
Chy04g00309 655 SUPERFAMILY Ran binding protein zinc finger-like 17 44 IPR036443 -
Chy04g00309 655 Pfam Elongation factor Tu domain 2 475 537 IPR004161 GO:0005525
Chy04g00309 655 Gene3D Translation factors 451 540 - -
Chy04g00309 655 CDD HBS1-like_II 454 538 - -
Chy04g00309 655 PANTHER TRANSLATION FACTOR 56 651 - -
Chy04g00309 655 CDD EF1_alpha 228 447 - -
Chy04g00309 655 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 224 455 IPR000795 GO:0003924|GO:0005525
Chy04g00309 655 CDD HBS1_C_III 542 650 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00309 Chy-Chr4:2745441 Chy09g00713 Chy-Chr9:9571429 5.21E-97 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00309 K14416 - csv:101219939 1107.43