Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00324 ATGGCTAATGCCCTTCCGTCGTGTCGATCACCGGCGGCTATGAAGGCCGCCGGCGAGGAAGAGTGGTCGGCGAAAGAAGGGAATGCTGAAGATTCAGATGTAATTTTTGAAGCCGAGGTTTTGAAGTTACGACATAAATGGGAGTTGGCATCGGTTCTGAACTTCTTGAATGTTTTCGAGCCTGTGATTGGGAAAAGCTTGAGGATATCGGCGGAAGAGATTGAAAAGGGTTTAATAAAGCCTGAAAGTTCATTAGCTGAACTCCATATTGCACTTTTGAAGGGCATACCACCTGTGAGTAAAATGTTAAATGGCTCTAATGCATGGGTGACTGTACTTTGTAAGAAGCTTGCCCCATGGTGGCCTTGGGTTGCTGAAGGGGAGATTCCACTGAAGGCTTTTAAAGGAGAGGAGATATCAAACTACAAGAAACTTGATCCTACAAAACGCTTGCTGCTATTAAAAGCTCTATGTGAAATTCGAGCAGATCAAGACGATACAATATCATATATTAGTGACTGCTTGAAAGATAAAACTCAAATGTCTTGTTTCCAGAAAGATAGATTTGGAGGAGATGGGAATGGAATTTCTTATTGGTATGATGGGAATCCATTTGTTGGTTATAGACTATACAGGGAAGTTATTAAATGTGATACAAAGACAAAAGGTAAACAGAAGGGAAGTGTGTCCCTTCCAATGTTTAGCACTCAATGGGAAACAATGGCCACAAATCTCGAGGAATTTCATAAAGTTAAAGACAACTTTTTGTGCAGCAAAATCACCAGAGAAGTTTCTGTTGGAAGGAAAATTGAATCTGATGCCATTCCCGTTCTTGAGAAACTCCAGAAGAAGAAGGAGAAGTCATTGAAACGTAAGCTTAGGGAGGACAAGCTCTTGAATGACTTTAACAAGGCTTGTATGGTCGGAGTTACACGTACTTGTCGCAACCGTACACCCGTGAGCTATACATTTGAGGAGTACAATCGAGCAATTGATGACGCCATTAGGCTATCTAGGAACGTGAAAAAAACTGATGAAAAAGAGCAAGGGATGCATCACAAGCGCAGTAGAAAAGATGTTTCTACTAGTGGGAATTCTGACACAATGATGAAATCAGAGAATGCCTCTGGAAACAGTGGCAAGAGTAGCAACAATGACAGTGGAAGCAACACGAGCAAAGAAACTGACATTGACAGTGCTGATGATGCCGATAACAAGGATTACGAGGACAAAGACGACGACGATGACGATTCAGATTCCAATTATTCCAATGCAGAAGAGAAGAATGAAACACTACATTCAGAACAAGAGACCGATGTCGAGAAGCCTGCAGAGGTGTGCAGTAAGAGGCCTGATAAAAGCATGAACCATATGAGCAATAATGAAACTAGAAAGGTGAGTGCCAAAAGTAGGTTGAGACAAAGACCAGTTCTTAACTCTGCCCTTGATGGTGTTGTACCTGATTCAGATGATGAAAATTGA 1482 41.77 MANALPSCRSPAAMKAAGEEEWSAKEGNAEDSDVIFEAEVLKLRHKWELASVLNFLNVFEPVIGKSLRISAEEIEKGLIKPESSLAELHIALLKGIPPVSKMLNGSNAWVTVLCKKLAPWWPWVAEGEIPLKAFKGEEISNYKKLDPTKRLLLLKALCEIRADQDDTISYISDCLKDKTQMSCFQKDRFGGDGNGISYWYDGNPFVGYRLYREVIKCDTKTKGKQKGSVSLPMFSTQWETMATNLEEFHKVKDNFLCSKITREVSVGRKIESDAIPVLEKLQKKKEKSLKRKLREDKLLNDFNKACMVGVTRTCRNRTPVSYTFEEYNRAIDDAIRLSRNVKKTDEKEQGMHHKRSRKDVSTSGNSDTMMKSENASGNSGKSSNNDSGSNTSKETDIDSADDADNKDYEDKDDDDDDSDSNYSNAEEKNETLHSEQETDVEKPAEVCSKRPDKSMNHMSNNETRKVSAKSRLRQRPVLNSALDGVVPDSDDEN* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2854997 2860325 - Chy4G070420.1 Chy04g00324 224223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00324 493 MobiDBLite consensus disorder prediction 422 469 - -
Chy04g00324 493 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 41 397 - -
Chy04g00324 493 PANTHER REMODELING AND SPACING FACTOR 1 41 397 IPR028938 GO:0006355|GO:0031213
Chy04g00324 493 MobiDBLite consensus disorder prediction 401 421 - -
Chy04g00324 493 MobiDBLite consensus disorder prediction 341 361 - -
Chy04g00324 493 MobiDBLite consensus disorder prediction 362 394 - -
Chy04g00324 493 MobiDBLite consensus disorder prediction 341 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00324 - - - csv:101214697 855.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02531 Chy-Chr2:28638876 Chy04g00324 Chy-Chr4:2854997 1.31E-90 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g394 Blo01g01356 . Bda01g00716 . . . . Bma01g02144 . . Cma01g01543 . Car09g00435 . . . Cpe06g00371 . . . . . . . . . . . . . . . Cone7ag1744 . . Lsi04g02172 Csa03g04378 Chy04g00324 . . . . . . . . . . Cmo01g01593 Cmo09g00497 . . Car01g01172 . . . . . . . . . . . . . . . . . . . . Cme04g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010520 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00324 Chy_Chr04 FPKM 1.868141 1.823622 3.605145 3.802626 7.63203 6.657943 7.453884 2.722198 2.275866 3.062684