Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00327 ATGTCCACGTCAATCTCCGAAACAAGGTCGCCGATGCCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTTAGCGATGGATACACACACCTGAACAAGTTCGTAATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTACTAGTGGTTTACTCAGCGTGGGTATCACCCTTTGAGCTTGCCTTCAAGAAAGTGGCGACTGGGTCTCTTTTACCCGTTGATTTGGTAGTGGATGCATTCTTTGCCATTGATATTGTGTTGACCTTCTTCGTGGCTTACTTGGATAAAGGCACATATCTCCTCGTTGATAATCATAAGAAGATAGCTCTACGTTACCTTACAAGCCTGGGGTTCCCCATGGACGTAGCCTCCACTCTCCCATTTCAGGTAATATACAGAATTTTCACTGGAAGGATGCACCGCAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGTGTTAGTCAACTTTTCACAAGGCTGGAGAAAGACATACGCTTTAGTTATTTTTATACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATACGGCTGGTTGTTTCTACTATTGGTTAGCAGTTCATCATAAAGATTCAGAAAATACATGGATTGGAATTGAAGTCGAAGATTTTCAAAATAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTTAATCTAGGGGAGAAAATTTTTAGCATCTGCTACATGCTATGCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACGCTGCTATTCGAACATTTATCATGAGGGATTCTATAAATGAGATATTGCGATATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAACAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTTGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTATTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAAGACTGGAACTGAACAGACTTTGTCAAAGTTGGAATCTCCAAAAATGGCAGGGGAAATTGCTGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCGTCAGGATCAGTCATCATCATTTTAAGCAATTGGTACAACCAAACAGCAATGATGGAAAAGTCCTTTTCTCCAACTTCGCTCAGCACTTGAAGGGATTAAAAAAGGAGGAGAAAAATGAAATACCCTACTTTTCCGATTTGATGGAAGACCTAAATTTTGAGCGCACAGAACCCAATGAGACACAAAATCAGAGAGTATCAAATTATAATGGAGATGGAAAAATTGAAGGAATATCAGAAGCATTTAAACCACAGCTACCTACAGTTCGCATCAGGGTGATAATTCATGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAATGGAAAACTGGTACTTCTGCCTCAGTCAATTGAAGAACTTTTTGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTTTCATGGTTGATGGCTCTACAGTAGAAGACTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA 1899 41.71 MSTSISETRSPMPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVSDGYTHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFAIDIVLTFFVAYLDKGTYLLVDNHKKIALRYLTSLGFPMDVASTLPFQVIYRIFTGRMHRSEAFGFLNLLRFWRLRRVSQLFTRLEKDIRFSYFYTRLAKLICVTLLAVHTAGCFYYWLAVHHKDSENTWIGIEVEDFQNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSICYMLCNIGLTSYLIGNMTNLIVHAAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEQVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYKTGTEQTLSKLESPKMAGEIAVMLNIPQPFTVRTRRLSQVVRISHHHFKQLVQPNSNDGKVLFSNFAQHLKGLKKEEKNEIPYFSDLMEDLNFERTEPNETQNQRVSNYNGDGKIEGISEAFKPQLPTVRIRVIIHEHHPDESTKDGNSNGKLVLLPQSIEELFGLAEKRFGKRGSSIFMVDGSTVEDLNVLREGDHLFFV* 633
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2913339 2920746 + Chy4G070450.1 Chy04g00327 224226
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00327 632 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00327 632 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00327 632 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00327 632 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00327 632 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00327 632 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00327 632 PANTHER POTASSIUM CHANNEL AKT1 62 631 IPR045319 GO:0005249|GO:0006813
Chy04g00327 632 PANTHER POTASSIUM CHANNEL AKT1 2 62 IPR045319 GO:0005249|GO:0006813
Chy04g00327 632 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
Chy04g00327 632 Pfam KHA, dimerisation domain of potassium ion channel 563 631 IPR021789 -
Chy04g00327 632 Gene3D Jelly Rolls 345 510 IPR014710 -
Chy04g00327 632 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Chy04g00327 632 SMART cnmp_10 381 498 IPR000595 -
Chy04g00327 632 CDD CAP_ED 381 493 IPR000595 -
Chy04g00327 632 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 2 62 - -
Chy04g00327 632 SUPERFAMILY cAMP-binding domain-like 310 501 IPR018490 -
Chy04g00327 632 ProSiteProfiles KHA domain profile. 563 632 IPR021789 -
Chy04g00327 632 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 62 631 - -
Chy04g00327 632 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Chy04g00327 632 Pfam Ion transport protein 61 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy04g00327 632 Gene3D - 63 305 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00327 Chy-Chr4:2913339 Chy04g00350 Chy-Chr4:3112466 2.65E-160 dispersed
Chy04g00327 Chy-Chr4:2913339 Chy11g00817 Chy-Chr11:11708053 4.12E-10 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00327 K21867 - csv:101215177 1229.54