Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g00327 | ATGTCCACGTCAATCTCCGAAACAAGGTCGCCGATGCCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTTAGCGATGGATACACACACCTGAACAAGTTCGTAATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTACTAGTGGTTTACTCAGCGTGGGTATCACCCTTTGAGCTTGCCTTCAAGAAAGTGGCGACTGGGTCTCTTTTACCCGTTGATTTGGTAGTGGATGCATTCTTTGCCATTGATATTGTGTTGACCTTCTTCGTGGCTTACTTGGATAAAGGCACATATCTCCTCGTTGATAATCATAAGAAGATAGCTCTACGTTACCTTACAAGCCTGGGGTTCCCCATGGACGTAGCCTCCACTCTCCCATTTCAGGTAATATACAGAATTTTCACTGGAAGGATGCACCGCAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGTGTTAGTCAACTTTTCACAAGGCTGGAGAAAGACATACGCTTTAGTTATTTTTATACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATACGGCTGGTTGTTTCTACTATTGGTTAGCAGTTCATCATAAAGATTCAGAAAATACATGGATTGGAATTGAAGTCGAAGATTTTCAAAATAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTTAATCTAGGGGAGAAAATTTTTAGCATCTGCTACATGCTATGCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACGCTGCTATTCGAACATTTATCATGAGGGATTCTATAAATGAGATATTGCGATATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAACAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTTGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTATTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAAGACTGGAACTGAACAGACTTTGTCAAAGTTGGAATCTCCAAAAATGGCAGGGGAAATTGCTGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCGTCAGGATCAGTCATCATCATTTTAAGCAATTGGTACAACCAAACAGCAATGATGGAAAAGTCCTTTTCTCCAACTTCGCTCAGCACTTGAAGGGATTAAAAAAGGAGGAGAAAAATGAAATACCCTACTTTTCCGATTTGATGGAAGACCTAAATTTTGAGCGCACAGAACCCAATGAGACACAAAATCAGAGAGTATCAAATTATAATGGAGATGGAAAAATTGAAGGAATATCAGAAGCATTTAAACCACAGCTACCTACAGTTCGCATCAGGGTGATAATTCATGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAATGGAAAACTGGTACTTCTGCCTCAGTCAATTGAAGAACTTTTTGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTTTCATGGTTGATGGCTCTACAGTAGAAGACTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA | 1899 | 41.71 | MSTSISETRSPMPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVSDGYTHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFAIDIVLTFFVAYLDKGTYLLVDNHKKIALRYLTSLGFPMDVASTLPFQVIYRIFTGRMHRSEAFGFLNLLRFWRLRRVSQLFTRLEKDIRFSYFYTRLAKLICVTLLAVHTAGCFYYWLAVHHKDSENTWIGIEVEDFQNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSICYMLCNIGLTSYLIGNMTNLIVHAAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEQVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYKTGTEQTLSKLESPKMAGEIAVMLNIPQPFTVRTRRLSQVVRISHHHFKQLVQPNSNDGKVLFSNFAQHLKGLKKEEKNEIPYFSDLMEDLNFERTEPNETQNQRVSNYNGDGKIEGISEAFKPQLPTVRIRVIIHEHHPDESTKDGNSNGKLVLLPQSIEELFGLAEKRFGKRGSSIFMVDGSTVEDLNVLREGDHLFFV* | 633 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2913339 | 2920746 | + | Chy4G070450.1 | Chy04g00327 | 224226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g00327 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 97 | 107 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Chy04g00327 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 74 | 81 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Chy04g00327 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 108 | 117 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Chy04g00327 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 251 | 268 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Chy04g00327 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 277 | 288 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Chy04g00327 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 295 | 304 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Chy04g00327 | 632 | PANTHER | POTASSIUM CHANNEL AKT1 | 62 | 631 | IPR045319 | GO:0005249|GO:0006813 | |
| Chy04g00327 | 632 | PANTHER | POTASSIUM CHANNEL AKT1 | 2 | 62 | IPR045319 | GO:0005249|GO:0006813 | |
| Chy04g00327 | 632 | Pfam | Cyclic nucleotide-binding domain | 401 | 484 | IPR000595 | - | |
| Chy04g00327 | 632 | Pfam | KHA, dimerisation domain of potassium ion channel | 563 | 631 | IPR021789 | - | |
| Chy04g00327 | 632 | Gene3D | Jelly Rolls | 345 | 510 | IPR014710 | - | |
| Chy04g00327 | 632 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 381 | 500 | IPR000595 | - | |
| Chy04g00327 | 632 | SMART | cnmp_10 | 381 | 498 | IPR000595 | - | |
| Chy04g00327 | 632 | CDD | CAP_ED | 381 | 493 | IPR000595 | - | |
| Chy04g00327 | 632 | PANTHER | POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED | 2 | 62 | - | - | |
| Chy04g00327 | 632 | SUPERFAMILY | cAMP-binding domain-like | 310 | 501 | IPR018490 | - | |
| Chy04g00327 | 632 | ProSiteProfiles | KHA domain profile. | 563 | 632 | IPR021789 | - | |
| Chy04g00327 | 632 | PANTHER | POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED | 62 | 631 | - | - | |
| Chy04g00327 | 632 | SUPERFAMILY | Voltage-gated potassium channels | 56 | 304 | - | - | |
| Chy04g00327 | 632 | Pfam | Ion transport protein | 61 | 305 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Chy04g00327 | 632 | Gene3D | - | 63 | 305 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g00327 | Chy-Chr4:2913339 | Chy04g00350 | Chy-Chr4:3112466 | 2.65E-160 | dispersed | |
| Chy04g00327 | Chy-Chr4:2913339 | Chy11g00817 | Chy-Chr11:11708053 | 4.12E-10 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g00327 | K21867 | - | csv:101215177 | 1229.54 |