Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00329 ATGGCTGATTCTGGTTCTGAGTTGTGTCCTGTTCAGTCTGTTGTGTTGGGGCACAAATCCAAAAGCAACTCCTTTTTCAGTGCCCCTGGTCTCTTTGTTGGCTTAAATTTCAAAGTGGCTTCAGATTCTGATTCAGTCAGGAGTCCCACCTCTCCTTTAGAACTTAGGGTGTTTTCAAATCTTAGCAACTCTGTAGGGTCCCCTAAATCATCACACGATGGACATAGAAGGAGCTGGGGTTGTAGTAAAGTAGGATTAGGGATTGTTGATTCTCTTGATGATGATAATAAGCTGTCTGGTAAAGCTCTTGCATCATTTGAGAGTAAGAACATCATTTTTGGACCTCAAGTTAGAACCAAGAATCAGACCCAAAATCTTCAAATTGACACAGTTTTTCCCCAGGCAGGTCCTAGATCTTTACCTAAAAATTGTCCCAATTTTCCCCCACCGCAGCTCAAAAAACCGAGCTACAGCTCGGAGGTTCTCTTTGAAATTGGAGAACCATTAGAATTCAAACCTTCAAAGAAGAGTGGGGCGTGTTCCTTGGACTCGCCTCGGTTTGTTTCAGCATCTTATGGTGTAAAAGGTCGTAGCTTCTTCCATTCTACGAATCCATTTGTGAAGAAATTGACCACGAATGGTGATTCTGAGCCTCAAGACAAAATTTTGTCTGCAGATATTTCAACCCCAGCATCTATAACGGTGCCTGTTCCCGGGATCATTGAGTCTCTTTCCGCAAGCGAAATCGAGCTTTCCGAGGATTATACCCGTGTAATATCCCATGGGGAGAATCCAAAAACCACTCACATTTTTGGTGACTGCATTTTAGAATGTCACTCTGATGATTTGAACAACTTGAACAAGAATGAGATGAATGAGATAGGATCTCCTCTATCAATTAGAAGCAGCTTGGACATTCCTTTTCAATGTCAACCAATTGATTTTCTAAGTTTTTGTTACTTTTGTAACAAGAAACTTGAAAGTGGGAAAGACATTTACATTTACAGGGGCGAGAAAGCGTTCTGCAGCTCCGACTGCCGGTATCAGGAGATCATGATTGAAGAAGAACAGGAGAAACCCATTAGTGAAATTTTCCAACATTCTTCAACATCTGGAGATGGTAAAGAAGAGTTCCAAACTCATGGCACCATTTTTGAATAA 1161 41.43 MADSGSELCPVQSVVLGHKSKSNSFFSAPGLFVGLNFKVASDSDSVRSPTSPLELRVFSNLSNSVGSPKSSHDGHRRSWGCSKVGLGIVDSLDDDNKLSGKALASFESKNIIFGPQVRTKNQTQNLQIDTVFPQAGPRSLPKNCPNFPPPQLKKPSYSSEVLFEIGEPLEFKPSKKSGACSLDSPRFVSASYGVKGRSFFHSTNPFVKKLTTNGDSEPQDKILSADISTPASITVPVPGIIESLSASEIELSEDYTRVISHGENPKTTHIFGDCILECHSDDLNNLNKNEMNEIGSPLSIRSSLDIPFQCQPIDFLSFCYFCNKKLESGKDIYIYRGEKAFCSSDCRYQEIMIEEEQEKPISEIFQHSSTSGDGKEEFQTHGTIFE* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2939851 2941113 + Chy4G070470.1 Chy04g00329 224228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00329 386 PANTHER FCS-LIKE ZINC FINGER 11 1 383 IPR044585 -
Chy04g00329 386 PANTHER FCS-LIKE ZINC FINGER 11 1 383 - -
Chy04g00329 386 Pfam zinc-finger of the FCS-type, C2-C2 310 356 IPR007650 -
Chy04g00329 386 ProSiteProfiles Zinc finger FLZ-type profile. 314 358 IPR007650 -
Chy04g00329 386 MobiDBLite consensus disorder prediction 366 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00329 - - - csv:101223099 757.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00329 Chy-Chr4:2939851 Chy04g01151 Chy-Chr4:17654795 1.53E-42 dispersed
Chy03g01174 Chy-Chr3:14931441 Chy04g00329 Chy-Chr4:2939851 3.38E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g390 . . Bda01g00719 . . . . Bma01g02147 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1741 . . . . Chy04g00329 Cme03g01673 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01282 Cam08g1740 Cec08g1322 Cco08g1443 Clacu08g1437 . Cre08g1224 Lsi08g01145 . . Cme04g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010804 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 5 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00329 Chy_Chr04 FPKM 1.52616 1.295142 4.759589 3.7097 3.743182 4.390313 4.92757 3.262687 2.866778 2.842125