Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00331 ATGGAAACGAAGGAACCGGATGAATGCAAAATACCATGTGATGAAGAAAATTTACTGGCTTCCAGAGAAATAATAGATGGTTTAGTGGGAATTGCATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAAATGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCCCCCAGTGCTGCGTTGTAGTTATTATATGGGTTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCATGGAGTTCTGATGATTGGAGCTGTACAACGTTTCTTGGATAATATGTTGCTGATGTGCTGTGATCTGCAGCTGTATAGAAGAAAGCAACAGTGTCATGGCCTGTTTGACGAGGTTGCAACTTACTCAAAGCCTCAACCAATTGGAATGGAAGAAAATCAACACATTACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCCGGCGTTGCCCTTTGAGAAATCAAATGACCCCCAAAAGGTGTTGGAGAGGGAATACATGCAACATGGATGTGCACATTATCGACGAAGGTGTCGTATCAGAGCCCCCTGTTGTAATGAAATATTTGATTGCCGTCATTGCCATAATGAAATAAAGAATAGTATTTGTGTTGATCAGAAAGAAAGGCACGAGATACCACGCCACGAAGTCAACCAGGTTATATGCTCACTCTGTGGAACTGAACAGGAGGTTCGCCAAGACTGTATCAACTGTGGTGTGTGTTTTGGAAAATATTTCTGCAAGAGTTGCAAGCTGTTTGATGACGATACCTCTAAGAAGCAGTATCACTGTACTGGCTGCGGAATTTGTAGAATTGGAGGGCGCGAAAACTTTTTCCACTGCCATAAGTGTGGTTGCTGCTATTCAATTCTTCTAAAAAATAGCCATCCTTGCGTTGAAGGGGCAATGCACCATGACTGTCCTGTTTGCTTTGAGTACCTATTCGATTCGACGAACGATGTTACGGTAATGCCATGTGGACACACCATCCATCAAAATTGCTTGAAGGAGATGAGAGATCACTTCCAATATGCTTGCCCTCTTTGCTCCAAGTCCGTTTGTGATATGTCCAAGGTGTGGGAAAAAATTGACGTGGAAATTGCAGCTACGCCCATTCCAGAGCCATACCAAAACAAAATGGTTTGGATTCTTTGCAACGATTGCGGTAAGACGTCAAAGGTGCAGTATCATGTTGTGGCTCAAAAGTGCTTGAATTGCAAGTCGTACAACACAAGACAGACCAGAGGCTAA 1269 42.95 METKEPDECKIPCDEENLLASREIIDGLVGIASGVFNKSSDHDVQMVTIQSWRLWSPPVLRCSYYMGSYNSSFLDELNSPHGVLMIGAVQRFLDNMLLMCCDLQLYRRKQQCHGLFDEVATYSKPQPIGMEENQHITCRGKEIRTVYTEQFDSPALPFEKSNDPQKVLEREYMQHGCAHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTEQEVRQDCINCGVCFGKYFCKSCKLFDDDTSKKQYHCTGCGICRIGGRENFFHCHKCGCCYSILLKNSHPCVEGAMHHDCPVCFEYLFDSTNDVTVMPCGHTIHQNCLKEMRDHFQYACPLCSKSVCDMSKVWEKIDVEIAATPIPEPYQNKMVWILCNDCGKTSKVQYHVVAQKCLNCKSYNTRQTRG* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2953836 2956754 - Chy4G070490.1 Chy04g00331 224230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00331 422 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 152 422 - -
Chy04g00331 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 358 IPR013083 -
Chy04g00331 422 SUPERFAMILY CHY zinc finger-like 174 248 IPR037274 GO:0008270
Chy04g00331 422 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 152 422 - -
Chy04g00331 422 Pfam Ring finger domain 312 355 IPR001841 -
Chy04g00331 422 ProSiteProfiles Zinc finger CHY-type profile. 170 246 IPR008913 GO:0008270
Chy04g00331 422 ProSiteProfiles Zinc finger RING-type profile. 313 356 IPR001841 -
Chy04g00331 422 SUPERFAMILY RING/U-box 312 360 - -
Chy04g00331 422 Pfam CHY zinc finger 177 258 IPR008913 GO:0008270
Chy04g00331 422 SMART ring_2 313 355 IPR001841 -
Chy04g00331 422 Pfam Zinc-ribbon 360 418 IPR039512 -
Chy04g00331 422 Gene3D - 384 422 - -
Chy04g00331 422 SUPERFAMILY Zinc hairpin stack 249 306 IPR037275 -
Chy04g00331 422 ProSiteProfiles Zinc finger CTCHY-type profile. 248 312 IPR017921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00331 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - csv:101203062 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00331 Chy-Chr4:2953836 Chy08g00879 Chy-Chr8:16182841 8.56E-130 dispersed
Chy04g00331 Chy-Chr4:2953836 Chy11g00847 Chy-Chr11:11956039 3.99E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g389 Blo01g01360 . Bda01g00720 . . . . Bma01g02148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000646 2 6 1 2 2 3 4 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 4 3 3 4 3 8 4 3 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00331 Chy_Chr04 FPKM 10.530949 12.498363 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0