Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00335 ATGGCAAGTCGTGTCAAGGAAGAAGAGCGAATTGAAAGGACCATACGTAATCTTTTGAAACTTCCAGAGAATCGAAGATGTATGAACTGCAATAGTTTGGGACCGCAATACGTCTGTACAACATTCTTGACATTTGTCTGTACAAATTGTAGTGGAGTACATCGTGAGTTCACTCACAGAGTGAAGTCAGTGTCAATGGCAAAATTCACGGCAGAAGAGGTGGCTGCTCTTCAAGCTGCGGGAAATCAGAGAGCACGGGAGATATATTTAAAAACATGGGATCCCCAGCGACATTCTTATCCAGAAAACAGCAATCTCCATCGGCTTCGGAACTTCATCAAGCATGTTTACGTTGATAGGAAATACTCGGGTGAAAGAGATGTTGATGAGCTCCCGAGGTTGAGACTTACTGAAAAGGATTCAACCCAAGAAAGGAGAAAGGTAGCTCCATATTATGGTGGATTACAGAACCAGCAAGTTGAAATGCCAAGATCTAGTTCAAAGAGGGAAACCAGGAGTCCAATTTTTTACTATGATGAGAGAAGCAGTCCTCGGTATTCAAAAGAAAACAACAGATATGGAGGCTATAGGAGAAGCCTTACACGCATTGAGGTTGTAGATGACAGAATCAAAGATGATAAACCCAGGCTCTCAAATGGAGTTACCAAGGCAACCATCCACTTGAGTCGCAGTCAAGAAAATTTACAGAAGTCTCCTTTTGCAGTTGAATTTAATAATAAAGTTACGACTGGCAAAAAGGAACCTACACGAAGAGTTGAGGAGGATGCAAGAACCAATAAAGGAATAGACGCTGGTGGTTCTGATCAGAATGTTGTTTCTGTTAATCCCGTGGAAACTAAAAGAGACAACATGGAGAGCCTAATTGATCTTAGCATCAGCTCTGAGCCTTCTGATGCCACCACCGCTGCATCACAGACCCAACAGATGCCTCCATCTAACAATGACAACTGGAACGCCTTTGAGCCATCTTCAACGAAAAGCACTTCAACAGCCCCCAATGCAAATACTCTGGAAGCTTTGCTTTTTGAATTAACAGTACCATCAGCTGGAGCTGATAAAAACCCGTCTAATGGATCTGCAAATGCTTACACTCGAGCAACTCTTTCTGGAAGTACTCTTACCCCAGATTTCACTATGGGGCAGACAGTATTACCAATCAGCGTTGAAGCTTCTGTACCTGAGACTAATGAAAGTGTACCGTTGCAAACTTCTAATGCAAGTCCTCCGCAATTCACATCCAATAAGGGTGGCGATATTGGACTACAAGTCATTAATGGACAGCAGCTTCCAAGCACGCAGCAAAAACAGACTTTTGATTATCCTTCTGCAGATATTGATTTGAATTCACAAATGATGACTCCAGCTGCTGTTCCAAATTTTGAATGGACTTCTTCATCGGGATCAAATGCTCAAGGAAATTCAAGTGTTTCAACTGACAAGATAGTTGCTGCAGATTCTAAACCAGCTCAGGGTGCCACTATTGGAGTTGGATCCCAACCTCCATCTTTGGAAAAGAGTTCTTCTATTGGAAGAAAGGAACTTCCTCTGGACCTTTTTACTGCTAACTACCCTCAAGTTCACAGCTCACATCCAGGTTGGCAGACTGGAACTCAACAGGTCATGGGTCAAAACTTGCAGTATTATCCTACCCCAGTGGCTGCAAGACCAACAAACCCATTTGATCTTGATGATGAAAAGAGTAAATTTTACTCACACAGTGCTCGTGCTAGCATGCCCCCTGTTACTGACCTAACGCAGAGATATGGCTATCAACCCGAAGCCCAATATTCAGGTACATACGTGGGGCAACAAGTCTACGGGAGTATTCCGTCTTTAAGACCCCAGGGAGTAGAAAACTTTGGATCACTCTCATTCCCAAGTCCTTTTGGCTCCTTCAACAACACAACTCAGCATCCGGGTAGCAGATCATATCCAGCACCTAACAACACAAATCCAATTGGTCCTTCGTTTCGCAATAATCCTTTCGGATAG 2013 43.32 MASRVKEEERIERTIRNLLKLPENRRCMNCNSLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSVSMAKFTAEEVAALQAAGNQRAREIYLKTWDPQRHSYPENSNLHRLRNFIKHVYVDRKYSGERDVDELPRLRLTEKDSTQERRKVAPYYGGLQNQQVEMPRSSSKRETRSPIFYYDERSSPRYSKENNRYGGYRRSLTRIEVVDDRIKDDKPRLSNGVTKATIHLSRSQENLQKSPFAVEFNNKVTTGKKEPTRRVEEDARTNKGIDAGGSDQNVVSVNPVETKRDNMESLIDLSISSEPSDATTAASQTQQMPPSNNDNWNAFEPSSTKSTSTAPNANTLEALLFELTVPSAGADKNPSNGSANAYTRATLSGSTLTPDFTMGQTVLPISVEASVPETNESVPLQTSNASPPQFTSNKGGDIGLQVINGQQLPSTQQKQTFDYPSADIDLNSQMMTPAAVPNFEWTSSSGSNAQGNSSVSTDKIVAADSKPAQGATIGVGSQPPSLEKSSSIGRKELPLDLFTANYPQVHSSHPGWQTGTQQVMGQNLQYYPTPVAARPTNPFDLDDEKSKFYSHSARASMPPVTDLTQRYGYQPEAQYSGTYVGQQVYGSIPSLRPQGVENFGSLSFPSPFGSFNNTTQHPGSRSYPAPNNTNPIGPSFRNNPFG* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2974920 2980872 - Chy4G070530.1 Chy04g00335 224234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00335 670 MobiDBLite consensus disorder prediction 630 670 - -
Chy04g00335 670 CDD ArfGap_AGFG 12 122 - -
Chy04g00335 670 MobiDBLite consensus disorder prediction 466 485 - -
Chy04g00335 670 PANTHER ARFGAP/RECO-RELATED 1 670 IPR044820 GO:0005096
Chy04g00335 670 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Chy04g00335 670 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Chy04g00335 670 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Chy04g00335 670 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Chy04g00335 670 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Chy04g00335 670 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 670 - -
Chy04g00335 670 SMART arf_gap_3 8 130 IPR001164 GO:0005096
Chy04g00335 670 MobiDBLite consensus disorder prediction 139 175 - -
Chy04g00335 670 MobiDBLite consensus disorder prediction 250 268 - -
Chy04g00335 670 MobiDBLite consensus disorder prediction 301 338 - -
Chy04g00335 670 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Chy04g00335 670 MobiDBLite consensus disorder prediction 246 278 - -
Chy04g00335 670 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00335 - - - csv:101215896 1293.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00335 Chy-Chr4:2974920 Chy05g01357 Chy-Chr5:17682305 1.18E-102 dispersed
Chy04g00335 Chy-Chr4:2974920 Chy12g00386 Chy-Chr12:4545430 4.61E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00335 . . . . . . Bpe04g00038 . . . . . Cma09g00486 . . . . . . . . . . . . . . . . . . . . . . Cme04g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011757 1 2 0 1 1 0 2 1 0 1 1 1 2 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00335 Chy_Chr04 FPKM 0.192843 0.161686 0.0 0.9923 0.548919 0.0 0.622683 0.0 1.11142 0.651309