Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00336 ATGGAAAATAGCTTAGAAAACTCACATGGTACTGATATACCGAAGAAATCGAGATCTTTGGATCTCAAGAGTTTGTACGAATCAAAGGTGTCCAAAGAGGTTCAGAATAAGAGGTTGAAGAGAAAGGGCCGGGCAGAGGATGGTGATGGTCAGAAGAACGAGAGGAGAAATAGGAAAAAAGTGTCCCTCAGTAATTTTAGTAGTATTTATAGTAGGAGCAGGAAGAGTTTGGACGAAGTGTATGATGCTGGGCTAGGTTCAAGTGGTCATGATTCAAAGAAGGCCTTAAAGTCAGAGTCAAAAGACAAGTTAAATAGCAGTAGTGAGTTTAACGAAGTTCCACTTATTTTAGATGAAAATGTTATGCACATTCCTAAGCGTAAGAGGGGTGGTTTTGTTAGGAGAAAGAAAACTCATGATGGTCAGATTTTGAAACCATCTGGGCAATTGGATGCTAAAGCTGGGTCATTGGATGATAAAGCTGGTACTGTGGATCAGATTGCTAAATCTAATGTCAAAGATTCAAGTGATCAGGTGGAATGCTGTAAGACTAATAGAAAGCTTGCATTCAAAGGTTTAAAGGAGAAAGAGCAGGAGTTAAGCTTGCATCTGAAGAAGGAAGATGGGCAGGCTGACCAGTTGACTAGAGAAAATGAATTAAATCCTGCTTCACGTTTGAAGGAGGAAGGTGAGCATATCGATCATTCAGTTGTAAAGCCTGTAAGTCCGTCATCCAAAAAATCAAAAAAGAATGTCAGGAAAAGAAAGATTTCTGCATCCGGGAGCAAAAGTAATTCAAAGGAGGGGGAGGCATCCATATCACAATCTACTAAGCGGCGTGATGGCTTCCCAGAAGATGATGAGGAGAATCTTGAGGAGAATGCTGCGAGAATGTTATCATCAAGATTTGATCCAAATTGCACTGGGTTTTCGTCAAACACAAAGGGTTCTTTGCCGCCAACAAATGGGTTATCCTTCTTGTTGTCTTCTGGACATGATAATGTTAGTCGTGGTCTTAAGCCTGGTTTGGAATCTGCATCAGTTGATGCTGCTGGAAGAGTATTGAGGCCTAGGAAGCAAAGGAAAGAAAAAAAAAGTTCACGCAAAAGACGCCATTTTTATGATATTTTATTTGGGGACATAGATGCAGCCTGGGTATTGAACAGGAGGATCAAAGTCTTTTGGCCTTTGGACCAAATCTGGTACTACGGGCTCGTGAATGACTATGATAAAGAAAGGAAGCTACATCATGTCAAATATGATGACCGCGATGAAGAATGGATTGATCTTCAAAATGAAAGGTTCAAACTGTTGCTGCTTCCTAGTGAAGTTCCTGGTAGGGAAGAACGCAGGAAGTCAGCAGTGGGAAATGATCCTGCTAATGAGAAAGGGAGATCAGGGTCCAGGAAAGGAAAAGAAACTGATGCTGTGATTTTGGAGGATGATTGCAATATTGGTAGCTATATGGATTCCGAGCCAATCATCTCTTGGTTGGCTCGATCTACTCACCGCAATAAATCATCTCCCTCTCATAATTCAAAGAGGCAGAAAACTTCCAGCTTATCTTCAAAATCAGGGTCCCAGGCAAATGAAAAGCCAGCAAATTTACTTGTTAAATCTTCAGGAATGCCAGAAAGATTAGCAGATGTGGATGGACCAGAGAAATCTGCTTCAGAAACAACCACTTGTTCTACGACACGCAAACTTCCGATTGTATATTTTAGGAAAAGGTTCCGCAACATAGGCACTGAAATGCCCCATAAGCGCGAGACAGATTTTGCTTCTAGAAGAAGTCATGCTTCTCTTGCCTTTTCTTTTTCTAATATTGATGATGTGGAAGAACCAGATATTTCTCCCAGAAGATCAGAAGCGCATAGGTTACTATGGTGTGTTGATGATGCTGGGTTATTACAGTTGGCTATTCCATTGATGGAAGTGGGGCAGTTCAGGTTTGAGCTAAGCATTCCGGAATATTCATTCTTGAATGTCACTTCTAGTGCAGATACTTTTTGGTTATTCCATTTAGCAATGCTCATCCAACATGGTACATTGACCTTACTATGGCCAAAGGTTCAATTAGAGATGTTATTTGTAGACAATGTGGTTGGGTTGAGATTTCTTCTGTTCGAAGGTTGCTTGATGCAGGCAGTGGCTTTCATTTTCCTGGTCCTGAAAATGTTTCAGTCACCCGGTAAACAGGGAAGGTATGCTGATTTTCAATTTCCAGTCACCTCTATCAGGTTCAAATTCTCGTGCCTTCAGGATATAGGAAAGCAGCTTGTGTTTGCTTTCCATAACTTTTCAGAAATAAAATATTCTAAGTGGGTTCACCTAGACAGGCTGAAGAAGTATTGCTTAATTTCTAAGCAGCTTCCATTAACCGAATGCACCTACGATAATATCAAAAAGCTTCAAAATAGCAAAACTCAGTTCCGTGCATCTCCATTTTGTGGCCGGTCTTCCTCTGTAAAGGGCACACAGAAGATTAGTAGTCTTGGTATCAACCTCAAAGGAGCTGCCTGCGTGAACAGTGGTCACTCTAATTTGTGTTCCAATGAAACAAAAAGAAACTTTCCAGCTTTTGCTCTTTCTTTTACTGCTGCACCTACCTTTTTCCTGAGTTTGCATCTCAAGCTGCTTATGGAACGGTGTGTGGCTCATTTAAGTTTGCAACATCATGATTCAATAGAGCATCCAGAAAATTATGGTAGATTGACTGTAGATGATGTGTTGACGGATGACTGTGCTAATAGTCTTAGTACGTCATCAAAGGCATCTGATAGATGGAATTCCTGTCCTCAGTCAGATTTAGGGACTGGTCTCTCTGATTGTGAGGATGGAGATGGGGTGCAGTCCTCCCAGTATAAAAGTACTCCTGTTGCTACAACTTGTGCAGGGTCTCAGGATACAGACAAAGCTAGAAATGGTGTCAAGAGGCAGATTCGACCATCGGGCAAGAACAAATCGGGGAAAACAACGGCTTTACCTAATGTGGCAAGATCTGATAACAATTCATTTTTGAATGACCTTAGTGTTGAGATTCCATCATTTCAGCCTGTGGATGGGGAGTTGCACGGCCCTCAGCAGTCCATGGATGTAGGATGGAATGCAGGTGCTGGTGTCATTCCCAGCCCTAACCCAAAAGCGCCACGCAGCACTTGGCATCGAAGTAAGAATAACTCAACATCACTTGGATTAGCCTCACATGGATGGTCAGATGGAAAGAGTTTTCTTATCAACGGTCTGGGAAATAGGACCAAGAAACCCCGAACGCAGGTGTCTTACTCGTTGCCTTTTGGAGGTTTTGATTATAGCTCACAGAGCAGAAACTCTCACCCTAAAGCAAGTCCTTACAAGCGAATTAGAAGGGCAAGTGAAAAGAGGTCGGATGTGGCTAGAGGATCCAAAAGGAACTTAGAACTACTCTCATGTGATGCGAATGTGTTAATTACACTTGGTGATAGAGGTTGGAGGGAATGTGGAGCAAGGGTGGTATTGGAGGTATTTGATCACAATGAATGGAAGCTTGCTGTGAAACTCTCAGGAATTACTAAATACTCTTACAAGGCTCATCAATTTTTGCAGCCTGGATCTACAAATCGATACACACATGCCATGATGTGGAAAGGAGGAAAGGATTGGATCCTGGAGTTTCCAGATAGGAGCCAGTGGGCAATCTTCAAGGAGTTGCATGAGGAGTGTTACAATCGAAACATTAGAGCAGCCTCCGTTAAGAACATTCCAATTCCTGGTGTTTGCTTGTTAGAAGAAAATGATGAATACACAGCAGAGAGTGCATATATGCGGAATCCTTCTAAGTACTTCCGGCAGGTAGAAACAGATGTTGAAATGGCTTTGAATCCAACCCGCGTCTTGTATGACATGGATAGTGATGACGAGCAGTGGATCAAGGATATTCGAACTTCTTCGGAAGTTGGAAGTTGTAATGGCTTGGGGGAGGTTTCAAGTGAGGTGTTTGAGAAGACTGTGGATGCATTTGAAAAGGCTGCATACTCTCAGCAACGTGATGAGTTCACAGATGATGAGATAGCTGAGGTGATGAATGAAACTTTGGCGTCAGATTGGACGAAGGCCATTTTTGAGTATTGGCAGCAGAAAAGGAGGCGGAAGGGAATGCCTTTAATTCGACATCTTCAGCCTCCTCTTTGGGAAACCTATCAACAGCAATTAAAAGATTGGGAGTGTACAATTAACAAAAGCAACACCAGTTTCTGCAATGGATATCATGAGAAGGCTGCTTCAGTTGAGAAACCACCAATGTTTGCATTCTGTTTGAAACCCCGAGGCTTGGAAGTCTTCAATAAAGGCTCTAAGCAAAGGTCGCACCGGAAGTTTTCGGTGTCTGGTCATAGCAACTCCATCGCTTATGATCATGATGGATTGCATGGTTTTGGTAGAAGATTGAATGGGTTTAGCCTTGGGGACGATAAGATGGCCTATATTGGCCATAACTATGAGTTTTTGGAAGATTCTCCTTTGATTCACACGTCGTCCAGCTTATTTTCGCCACGACTTGAAGGCGGCATTTTGAGTAATGATGGGTTGGAGAGGAATTTTCTACCAAAACTTCACAAGAGCAAGTCCAGGAAGTATGGGACATGGGCTTCTCCATACGACTCGGGGATGGCTTCCTTCAATCAGAGAATGATTGGAAAGAGAGACGGGCTAAATAGGTGGAACAATGGTTATTCTGAGTGGTCAAGCCCACGACGTTATCCATTTGACGGATCTCAAAGGCAGATCCTCGAACAATTGGAGGGTTCCGATGTTGACGAGTTCAGGCTCCGCGATGCATCTGGTGCTGCTCAACATGCACGCAATATGGCTAAGCTCAAGAGAGAGAAGGCCAGGCGATTGCTATACAGAGCGGACCTTGCGATTCACAAGGCAGTGGTTGCTATCATGACCGCTGAAGCAATGAAAGCTGCTTCCGAGGATGACTCCAATGGTGATGGATAA 4980 42.89 MENSLENSHGTDIPKKSRSLDLKSLYESKVSKEVQNKRLKRKGRAEDGDGQKNERRNRKKVSLSNFSSIYSRSRKSLDEVYDAGLGSSGHDSKKALKSESKDKLNSSSEFNEVPLILDENVMHIPKRKRGGFVRRKKTHDGQILKPSGQLDAKAGSLDDKAGTVDQIAKSNVKDSSDQVECCKTNRKLAFKGLKEKEQELSLHLKKEDGQADQLTRENELNPASRLKEEGEHIDHSVVKPVSPSSKKSKKNVRKRKISASGSKSNSKEGEASISQSTKRRDGFPEDDEENLEENAARMLSSRFDPNCTGFSSNTKGSLPPTNGLSFLLSSGHDNVSRGLKPGLESASVDAAGRVLRPRKQRKEKKSSRKRRHFYDILFGDIDAAWVLNRRIKVFWPLDQIWYYGLVNDYDKERKLHHVKYDDRDEEWIDLQNERFKLLLLPSEVPGREERRKSAVGNDPANEKGRSGSRKGKETDAVILEDDCNIGSYMDSEPIISWLARSTHRNKSSPSHNSKRQKTSSLSSKSGSQANEKPANLLVKSSGMPERLADVDGPEKSASETTTCSTTRKLPIVYFRKRFRNIGTEMPHKRETDFASRRSHASLAFSFSNIDDVEEPDISPRRSEAHRLLWCVDDAGLLQLAIPLMEVGQFRFELSIPEYSFLNVTSSADTFWLFHLAMLIQHGTLTLLWPKVQLEMLFVDNVVGLRFLLFEGCLMQAVAFIFLVLKMFQSPGKQGRYADFQFPVTSIRFKFSCLQDIGKQLVFAFHNFSEIKYSKWVHLDRLKKYCLISKQLPLTECTYDNIKKLQNSKTQFRASPFCGRSSSVKGTQKISSLGINLKGAACVNSGHSNLCSNETKRNFPAFALSFTAAPTFFLSLHLKLLMERCVAHLSLQHHDSIEHPENYGRLTVDDVLTDDCANSLSTSSKASDRWNSCPQSDLGTGLSDCEDGDGVQSSQYKSTPVATTCAGSQDTDKARNGVKRQIRPSGKNKSGKTTALPNVARSDNNSFLNDLSVEIPSFQPVDGELHGPQQSMDVGWNAGAGVIPSPNPKAPRSTWHRSKNNSTSLGLASHGWSDGKSFLINGLGNRTKKPRTQVSYSLPFGGFDYSSQSRNSHPKASPYKRIRRASEKRSDVARGSKRNLELLSCDANVLITLGDRGWRECGARVVLEVFDHNEWKLAVKLSGITKYSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWAIFKELHEECYNRNIRAASVKNIPIPGVCLLEENDEYTAESAYMRNPSKYFRQVETDVEMALNPTRVLYDMDSDDEQWIKDIRTSSEVGSCNGLGEVSSEVFEKTVDAFEKAAYSQQRDEFTDDEIAEVMNETLASDWTKAIFEYWQQKRRRKGMPLIRHLQPPLWETYQQQLKDWECTINKSNTSFCNGYHEKAASVEKPPMFAFCLKPRGLEVFNKGSKQRSHRKFSVSGHSNSIAYDHDGLHGFGRRLNGFSLGDDKMAYIGHNYEFLEDSPLIHTSSSLFSPRLEGGILSNDGLERNFLPKLHKSKSRKYGTWASPYDSGMASFNQRMIGKRDGLNRWNNGYSEWSSPRRYPFDGSQRQILEQLEGSDVDEFRLRDASGAAQHARNMAKLKREKARRLLYRADLAIHKAVVAIMTAEAMKAASEDDSNGDG* 1660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2982850 2989097 - Chy4G070540.1 Chy04g00336 224235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00336 1659 MobiDBLite consensus disorder prediction 502 535 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 1106 1132 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 1 67 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 946 970 - -
Chy04g00336 1659 PANTHER OS01G0179500 PROTEIN 2 1659 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 1044 1067 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 224 291 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 128 159 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 258 272 - -
Chy04g00336 1659 Pfam Enhancer of polycomb-like 1241 1335 IPR019542 -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 82 109 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 944 1001 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 448 475 - -
Chy04g00336 1659 PANTHER PHD FINGER PROTEINS 2 1659 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 92 106 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 502 563 - -
Chy04g00336 1659 SMART TUDOR_7 383 441 IPR002999 -
Chy04g00336 1659 Gene3D - 384 434 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 9 61 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 1050 1067 - -
Chy04g00336 1659 MobiDBLite consensus disorder prediction 986 1001 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00336 - - - csv:101216141 3202.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00421 Chy-Chr3:6193775 Chy04g00336 Chy-Chr4:2982850 7.79E-43 dispersed
Chy04g00336 Chy-Chr4:2982850 Chy03g00302 Chy-Chr3:3326127 4.56E-09 dispersed
Chy04g00336 Chy-Chr4:2982850 Chy01g01947 Chy-Chr1:24691568 3.73E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g379 Blo01g01361 . Bda01g00721 Bda03g00052 . . Bma04g00052 Bma01g02149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00336 . . . . . . Bpe04g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00376
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004344 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00336 Chy_Chr04 FPKM 3.387788 3.394552 0.423384 0.345112 3.705845 5.737397 5.058644 0.0 0.0 0.0