Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00340 ATGGGAGTGGATTATTACAATATATTGAAGGTGAACAGGAACGCCAATGACGATGATCTCAAGAAGGCGTATAGAAAATTGGCTATGAAATGGCATCCTGATAAAAACCCCAACAACAAGAAAGAAGCTGAAACCAAATTCAAGCAGATCTCCGAGGCCTATGAGGCAAGTTTTTTGTTTCTCTTGGAAATTTTGTTTCCACGAATATTTGTTCTGTTTTCTAATGATTGGGACCTTGAGGATGAGAATGTGTTGAGTGATCCCCAGAAGAAGGCTATTTATGATCAATATGGTGAAGAAGGGTTGAAAGACATGCCACCACCAGGCAGTGGAGGCTTCCCATTTGGGAGCGGCGGTGGAGGAGGGTCGAGCGGGTTTAATCCGAGGAATGCAGAGGATATATTTGCAGAATTTTTTGGGAGCAGCCCTTTCGGATTTGGTTCATCAGGACCAGGAAAGTCTATGAGGTACCAATCAGAGGGAATTTTTGGGGGATTCGGTGGAAGCGAAAATATTTTTAGAACATATAGTGAAAATGTAACACCGAAAAAACCTCCACCGGTTGAGAGCAAATTGCCCTGTACTCTTGAAGAACTGTATTCAGGATCAACAAGGAAAATGAAGATTTCAAGAACAGTTGTTGATGCAAACGGACGACAAGTTCCTGATACAGAGATATTGACCATCGATGTGAAGCCCGGTTGGAAGAAAGGGACCAAAATCACCTTCCCAGATAAAGGAAATGAACAACCAAACCAACTACCTGCAGATCTAGTATTTGTCATTGATGAGAAGCCCCATGATGTTTTCAAAAGAGATGGTAATGATATCATTATGAACCATAGGGTGACACTAGCCGAAGCATTGGGTGGAACCACTATAAATCTCACCACGCTTGATGGTCGTAGCTTATCAATACCCGTAATAGACATTGTTAGCCCAGGCTACGAGCTCGTGATTGCCAGAGAAGGAATGCCAATTGTAAGAGAGCCAGGTAACCGAGGTGATTTAAGGATCAAATTCGACGTAAAATTTCCAACAAGATTAACACCCGAGCAACGAGCTGGACTCAAACGTGCATTGGGAGGATAA 1092 42.77 MGVDYYNILKVNRNANDDDLKKAYRKLAMKWHPDKNPNNKKEAETKFKQISEAYEASFLFLLEILFPRIFVLFSNDWDLEDENVLSDPQKKAIYDQYGEEGLKDMPPPGSGGFPFGSGGGGGSSGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSMRYQSEGIFGGFGGSENIFRTYSENVTPKKPPPVESKLPCTLEELYSGSTRKMKISRTVVDANGRQVPDTEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVFKRDGNDIIMNHRVTLAEALGGTTINLTTLDGRSLSIPVIDIVSPGYELVIAREGMPIVREPGNRGDLRIKFDVKFPTRLTPEQRAGLKRALGG* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3047334 3049311 + Chy4G070580.1 Chy04g00340 224239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00340 363 CDD DnaJ_C 186 349 - -
Chy04g00340 363 SUPERFAMILY Chaperone J-domain 83 101 IPR036869 -
Chy04g00340 363 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 363 - -
Chy04g00340 363 CDD DnaJ 4 55 IPR001623 -
Chy04g00340 363 Pfam DnaJ domain 4 55 IPR001623 -
Chy04g00340 363 Pfam DnaJ C terminal domain 188 346 IPR002939 -
Chy04g00340 363 SUPERFAMILY HSP40/DnaJ peptide-binding domain 269 355 IPR008971 GO:0006457|GO:0051082
Chy04g00340 363 Gene3D - 266 362 - -
Chy04g00340 363 ProSiteProfiles dnaJ domain profile. 4 98 IPR001623 -
Chy04g00340 363 SMART dnaj_3 3 90 IPR001623 -
Chy04g00340 363 SUPERFAMILY HSP40/DnaJ peptide-binding domain 187 268 IPR008971 GO:0006457|GO:0051082
Chy04g00340 363 Gene3D - 187 265 - -
Chy04g00340 363 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 363 - -
Chy04g00340 363 PRINTS DnaJ domain signature 42 62 IPR001623 -
Chy04g00340 363 PRINTS DnaJ domain signature 90 109 IPR001623 -
Chy04g00340 363 PRINTS DnaJ domain signature 24 39 IPR001623 -
Chy04g00340 363 PRINTS DnaJ domain signature 6 24 IPR001623 -
Chy04g00340 363 SUPERFAMILY Chaperone J-domain 3 55 IPR036869 -
Chy04g00340 363 Gene3D DnaJ domain 3 149 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00340 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101204033 592.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00275 Chy-Chr2:1799783 Chy04g00340 Chy-Chr4:3047334 7.92E-129 dispersed
Chy04g00340 Chy-Chr4:3047334 Chy11g00668 Chy-Chr11:8226685 1.92E-139 dispersed
Chy04g00340 Chy-Chr4:3047334 Chy01g00472 Chy-Chr1:3420535 2.92E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g373 Blo01g01363 . Bda01g00723 . . . . Bma01g02150 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1734 . . . . Chy04g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007809 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00340 Chy_Chr04 FPKM 1.245098 1.082082 0.0 0.412731 2.130903 2.782389 1.467228 1.02977 0.420828 1.368288