Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00341 ATGGATTCTTCACTATCAGAAGCTCCTAGAGGGGTTTCAGTTTCTTCCTCGGATCCTTCCGTGCATCAATATTTAGTACCCAACAGGCAAATGGAACTGATGGAATCAATTTCCGGTGGCTCTCTAACTCAGAGTGGAATGCTATCACGCATGCAAAGAGGACAGGTTGATGTTAAAGCTGGCAATTTTGGACGGCAACAATTTCAAATACCCGACAATCAATTTGGAGGGACTGGAAACATGGTGAGAACTGCAGAAGGGATGCTGTCACTTCCCGTGAAGCGCAAAGCATCAAATGAGCCTTTGAACTCTCTTGCACAGCAGTCTCCATTGCATAATAAGCGTGTTGCACCCATGGAACATCGACCATGGTTGCAGCCAGCTTCTGGAATAGCCAAAAGATCTCATTTACAAATACCAAACAATTCCCCAGCATCTGCGCCAATGTATTCCCCTGCAGGAACTAAAAGAAAGGTACAGCAAATGGAATCACATCCAACTAAAGTTGGACATCAACGATCCAATTCTTCCAAAGGCCAGACTGCTCCGCCCACACCAACTTTCAAAATACAAAATGAACCAACTGGATCTGTGAGATCGAAGATGAGGGAATCCTTGACTGCTGCATTAGCCTTGGTATCACAGCAGGAAGACAAGTCATCAAATGATGAAAAAAGTCCTTCGACAGAGGCTGAAAAGTCTTCAACTCCAAAGCAGGAAAATTCTTTATCATCTGGTCCAGCTATTGGTCATGTATCTGATGACTCAAAGAAAATCTTTTCTGAAAAATTAGATTCTGTTGGTCTTGAAGACAATGTAGGAAAGATGTTAGATAAGAGTTCGCTATGTGTAAATGTTAGTGATTTAGATGCATTGAGATATGATGGGCGAGTCTTTCAACCAAATAATGTTTTGTCGTATGAAGATATTTCTTTTGGGGACAACTTTTTTATTAAAGATGATCTTTTACAAGAAAATGGTCTCTCGTGGGTACTGGAGGCTGATTTAGGCGTAGCTGATAAAAAGGAAATTCTAACTGATGAACTTCAGAAGATAGATGTTGGTATAGGAAATCAAAACCAGGTAGCAAAACCAGTTCAGACACCCGAGTCTTTAGCTTTGAAAATTGAAGAAGAATTATTTAAATTATTTAGTGGTGTTAATAAAAAGTACAAGGAAAAAGGAAGGTCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCTGAATTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCCGAAAGATTGTGCTCGATGACTGCTGAGGAACTTGCTTCCAAGGAGCTTTCTGAGTGGAGAATGGCGAAGGCTGAAGAATTTGCACAAATGGTGGTTTTACCGGACACTGAAGTTGATATCAGGCGTTTGGTAAAGAAGACACATAAAGGTGAATTCCAGGTAGAAGTTGAAGAATACGATAATAATGCCTCTGCAGATGTTTCATCTGGGGCTTCTACATTTTCTCAGAGTCAGAGTCAACGTAACAAGAATGAGTCTGAAGATGGGTCACCGGATGAACCCGAAGCAGTTAAGGACGAGCAGAATATTTCTGGCCAGAAAATTGCTGCATCTAACAAGGATAATTACACCTTCACAATTGCATCAAATGAAGGGTCTGATTTGATGCAGGGACTCATGGTTGATGATGGTCTGAAGGATACGGAGTTGCTGCCTCCAATTGTCTCCCTAGATGAGTTCATGGAGTCCCTCGATACGGAGCCGCCTTTTGATATTTTAGCTGGAAAATTGTCTCCTGTTTTGGAGAAGGGTGAGTCTGAGCCTAACTCTCGGTTGAAGACTGTAGCTCCTACGAAAGGTGCTACGGATGTCAGTACAGAAAAGAATAATGAGGAGTCTCATACAAAAGCAGATATTGGGTCATCTTCTACTGGTCACGTGGATTTGCAACCTAGTCCTAGTAAACTTGACGTGGATTCTAATGAGAACCAAGCTGGTTTAAGAACGTCAGACAGGAACGACGTTGCAAAATCTAATGATAGTAATAATGCAAAATCTGAGACAGAATCTCCTGCTAGCGCAGTTAAGTTAGAATATCTATGGGATGGCATTCTCCAGTACAACATTTCCACAATGACTTCAGTCGTGGGTACCTACATAAGTGGGGAAAGGACTTCGGCGAAAGATTGGCCTGGCATTCTTGAGATTAAAGGGAGAGTAAGATTGGATGCGTTTGAGAAGTTCCTTCAAGAGCTTCCATTATCACGGAGTCGTGCCGTTATGGTTCTTCATTTGGATTTGAAGGAGGGACGCCCGGAAAGCGAGCGAGCTGATTTACATGAGGTAGCTGAGTCATATGTCGTGGACGAGCGAGTTGGTATAGCGGAACCTGGATCTGGGGTTGAATTTTATTTTTGCCCTCCACATGGAAGAATTCTTGAAATGCTTGGCAGGATCCTTCTAAAGGAAACTTCTAATGAGGCACTTAATGCAATTGAAAATGGCTTAATAGGCGTTGTTGTATGGAGAAAAACTCAATTAACTTCAATGTCACCAAACTCAACGTCACACCACAAACGCAGTTCAAAAAAGCAACATTTTAGTTCTAGAAGACCACAGGAGACATCAAACTTTAAAGCTAATAATACTTCCCCTAAACAGACTATTCCTCGTAGTAGCTATTTCCCTATTGCCACTTCTCATCCTCCGCCTGAGGAGGATGATGCCGATGGTGACGATGATGTCCCTCCTGGTTTTGGTCCTTCAACTGCTCGGGATGATGACGATCTCCCTGAATTTAACTTCTCTGGTTCTGCAAACCCTCCCGGGTTCTCTTTGCAGAACAAGCACCCTCTTACCCCTCGAGGGCAGTCCTCGAGACCACCTTCGTTCCAAACAGTTTCCCAAACTGGGTCTCGTCCAGTTGAGCAAATGCGAGAGCTTGTGCACAAATATGGGCAAAACTTAGGGAAGAACACCCCCTCCACAGTAAACTGGGGAGAAAGGAGTGGGTTTGGTTCGGTAGCTATCCAGCCTTGGAACGACGACGATGACGATATCCCAGAATGGCAACCGCAAGCAGCTGCAGCCTCACATCAGCAAATACCTCCTCCCTCACATTCGCAACCGCCCTTACGCGGGTTTCAGCAGCCAACGTTAAGGCCTCAGTACATGATGAACCATAATCAACAGCCCATGGGGCACCCTCCTCCCTTAAATGTGAGTCAACAAGGGACATGGTGGGCTCCTCAGCAAGGCCTTAACATCAACAACAGCAATAATTTACAGCCTATTAGCAATTTAAATAGTAGTAATGGTCAGTTTTATGGGTCATTTGGGAGATCAGCTCCTTCGAACCCTTCAAATAATAGAGGGTTTTGA 3363 43.44 MDSSLSEAPRGVSVSSSDPSVHQYLVPNRQMELMESISGGSLTQSGMLSRMQRGQVDVKAGNFGRQQFQIPDNQFGGTGNMVRTAEGMLSLPVKRKASNEPLNSLAQQSPLHNKRVAPMEHRPWLQPASGIAKRSHLQIPNNSPASAPMYSPAGTKRKVQQMESHPTKVGHQRSNSSKGQTAPPTPTFKIQNEPTGSVRSKMRESLTAALALVSQQEDKSSNDEKSPSTEAEKSSTPKQENSLSSGPAIGHVSDDSKKIFSEKLDSVGLEDNVGKMLDKSSLCVNVSDLDALRYDGRVFQPNNVLSYEDISFGDNFFIKDDLLQENGLSWVLEADLGVADKKEILTDELQKIDVGIGNQNQVAKPVQTPESLALKIEEELFKLFSGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEEFAQMVVLPDTEVDIRRLVKKTHKGEFQVEVEEYDNNASADVSSGASTFSQSQSQRNKNESEDGSPDEPEAVKDEQNISGQKIAASNKDNYTFTIASNEGSDLMQGLMVDDGLKDTELLPPIVSLDEFMESLDTEPPFDILAGKLSPVLEKGESEPNSRLKTVAPTKGATDVSTEKNNEESHTKADIGSSSTGHVDLQPSPSKLDVDSNENQAGLRTSDRNDVAKSNDSNNAKSETESPASAVKLEYLWDGILQYNISTMTSVVGTYISGERTSAKDWPGILEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDLKEGRPESERADLHEVAESYVVDERVGIAEPGSGVEFYFCPPHGRILEMLGRILLKETSNEALNAIENGLIGVVVWRKTQLTSMSPNSTSHHKRSSKKQHFSSRRPQETSNFKANNTSPKQTIPRSSYFPIATSHPPPEEDDADGDDDVPPGFGPSTARDDDDLPEFNFSGSANPPGFSLQNKHPLTPRGQSSRPPSFQTVSQTGSRPVEQMRELVHKYGQNLGKNTPSTVNWGERSGFGSVAIQPWNDDDDDIPEWQPQAAAASHQQIPPPSHSQPPLRGFQQPTLRPQYMMNHNQQPMGHPPPLNVSQQGTWWAPQQGLNINNSNNLQPISNLNSSNGQFYGSFGRSAPSNPSNNRGF* 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3050015 3054848 - Chy4G070590.1 Chy04g00341 224240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00341 1120 MobiDBLite consensus disorder prediction 843 969 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 595 685 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 1083 1120 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 483 522 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 865 889 - -
Chy04g00341 1120 SMART mid_6 335 443 IPR003618 GO:0006351
Chy04g00341 1120 Pfam Transcription factor S-II (TFIIS), central domain 343 447 IPR003618 GO:0006351
Chy04g00341 1120 MobiDBLite consensus disorder prediction 483 505 - -
Chy04g00341 1120 Gene3D - 342 435 IPR036575 GO:0006351
Chy04g00341 1120 MobiDBLite consensus disorder prediction 157 201 - -
Chy04g00341 1120 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 19 1104 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 932 969 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 232 249 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 630 684 - -
Chy04g00341 1120 SUPERFAMILY Elongation factor TFIIS domain 2 365 436 IPR036575 GO:0006351
Chy04g00341 1120 MobiDBLite consensus disorder prediction 1008 1044 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 135 149 - -
Chy04g00341 1120 Pfam SPOC domain 688 836 IPR012921 -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 506 521 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 132 201 - -
Chy04g00341 1120 ProSiteProfiles TFIIS central domain profile. 337 460 IPR003618 GO:0006351
Chy04g00341 1120 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 19 1104 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 1 22 - -
Chy04g00341 1120 MobiDBLite consensus disorder prediction 213 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00341 - - - csv:101216628 2136.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00232 Chy-Chr3:2177869 Chy04g00341 Chy-Chr4:3050015 6.52E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00341 Chy_Chr04 FPKM 13.1 9.327537 0.0 0.0 14.299217 15.929214 12.504053 0.0 0.0 0.248893