Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00342 ATGAGTAGGGAAAATGTTAATTTTCAAGTTGAAGAGCGCTCCGGCAGAATCACGAGAGCACGCGCAAAAGAGCTGAGCGAATCAGGAGGCATCTTATGTTCCTCAAAATCTTCTGGAGTTCAGAAGCATATTCTACGAGCTAACTCAAAAAGAATGGCATCTGATGATATTAAGACTTGTTCAGGCTCCTCCCATGGCCTTCCTAACAAAAGAAGAGCAGTGCTCAAGGATGTGACCAACATTTCCACCAAAGGTTTTGATAAGAATTGCAGAAATGTATCTAATATTCAGGGTGCCAAAACAACAAGAAAAGTTTCTTCAAAAGCTAAGGCAAATGCGCCTTCTAATGCTCCTGAAGAAATTTTAGGTGCAGAAGAAGATGCAAACACAAGACTGGCTGAGGATTTGTCTAAAATAAGGGTGGTAGAATCTCGAGAGGTCTCTCTAAGAGAGACTTTGGACGAAAAAGAGAGAACAGAGCAAACTAGGAGTCTTACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATATATGGCACCTCAACGATCGGCAGCATTAAGGGATAGAGGTGTTATAGACATTGATTCAAACTCTAAATGTCTTCAATCATGCAGCACATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTACATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAATCTAGTTTCAGATACACTCTATTTGACTGTTAATGTCATCGATCGATTCCTCTCTCAAAATTATATTGAAAAGAAGCGACTACAACTTGTTGGTGTTGCAAGCATGTTAATTGCATCAAAATATGAAGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACCAAAGGAGAGGTTGTAGAAATGGAGAGTGAAGTTTTGAACATACTGCACTTTCGGCTATCTGTTCCCACTACTAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGAAATTATATGAACAATGGGAGCTAATTGTGGCATTTCAACTATTTTGCAATCAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCCGCATCCGCCGTATTTCTTGCAAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCGGTTACAACGTTTCTCAGCTGAAAACTGTTGTGCTTGCCCTCCATGACTTGCAACTAAACACCAGTGCTTCCTCCTTAAATGCCATACGTCAAAAGTATAAACAACCGAAGTTCAAATGCGTAGCTACATTAACGTCTACAAAATCAGTTCTATCACTATTTTGA 1509 40.16 MSRENVNFQVEERSGRITRARAKELSESGGILCSSKSSGVQKHILRANSKRMASDDIKTCSGSSHGLPNKRRAVLKDVTNISTKGFDKNCRNVSNIQGAKTTRKVSSKAKANAPSNAPEEILGAEEDANTRLAEDLSKIRVVESREVSLRETLDEKERTEQTRSLTSRECGVSDMILSVSSEESIPQPNEKYMAPQRSAALRDRGVIDIDSNSKCLQSCSTYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNILHFRLSVPTTKTFLRRFIQSAHASYKKLYEQWELIVAFQLFCNQVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTGYNVSQLKTVVLALHDLQLNTSASSLNAIRQKYKQPKFKCVATLTSTKSVLSLF* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3059342 3064555 - Chy4G070600.1 Chy04g00342 224241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00342 502 CDD CYCLIN 352 463 IPR013763 -
Chy04g00342 502 CDD CYCLIN 255 344 IPR013763 -
Chy04g00342 502 SMART cyclin_7 261 345 IPR013763 -
Chy04g00342 502 SMART cyclin_7 379 464 IPR013763 -
Chy04g00342 502 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Chy04g00342 502 SMART Cyclin_C_2 354 495 IPR004367 -
Chy04g00342 502 PANTHER CYCLIN-A2-4 50 502 - -
Chy04g00342 502 SUPERFAMILY Cyclin-like 353 496 IPR036915 -
Chy04g00342 502 PANTHER CYCLINS 50 502 IPR039361 -
Chy04g00342 502 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Chy04g00342 502 Gene3D - 225 491 - -
Chy04g00342 502 Gene3D - 239 352 - -
Chy04g00342 502 ProSitePatterns Cyclins signature. 256 287 IPR006671 -
Chy04g00342 502 MobiDBLite consensus disorder prediction 97 123 - -
Chy04g00342 502 Pfam Cyclin, C-terminal domain 354 494 IPR004367 -
Chy04g00342 502 MobiDBLite consensus disorder prediction 97 113 - -
Chy04g00342 502 PIRSF Cyclin_A_B_D_E 33 501 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02038 Chy-Chr1:25216266 Chy04g00342 Chy-Chr4:3059342 8.48E-132 dispersed
Chy03g01569 Chy-Chr3:17814419 Chy04g00342 Chy-Chr4:3059342 1.65E-96 dispersed
Chy04g00342 Chy-Chr4:3059342 Chy07g00171 Chy-Chr7:1422202 3.21E-97 dispersed
Chy03g00762 Chy-Chr3:10263733 Chy04g00342 Chy-Chr4:3059342 2.17E-103 transposed
Chy03g01169 Chy-Chr3:14889634 Chy04g00342 Chy-Chr4:3059342 6.38E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00342 K06627 - csv:101204275 919.842