Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00346 ATGGCAGCATCTCTAAGCTCTTGGTCCCACGCCCTCGTCAGAATCTCCCCTTACACCTTCTCTGCCGTCGGCATTGCCATTTCCATCGGCGTTTCTGTCCTCGGAGCCGCCTGGGGAATCTACATAACCGGAAGTAGTCTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCCAAGAATTTAATTAGTGTAATTTTCTGTGAAGCTGTGGCTATATATGGTGTCATTGTGGCCATCATTTTACAAACAAAACTGGAGAGTGTTCCAGCATCTCAAATCTATACTCCTGAGTCTCTAACAGCAGGATATTCAATCTTTGCCTCTGGGATTATTGTCGGCTTTTCTAACTTGTTCTGCGGGTTATGTGTAGGGATTATTGGAAGCAGTTGTGCATTGTCTGATGCTCAAAACTCATCTCTTTTTGTAAAGATTCTTGTGATCGAGATCTTTGGAAGCGCACTCGGATTATTTGGTGTAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGCAAAATCAATTTAA 534 43.82 MAASLSSWSHALVRISPYTFSAVGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYTPESLTAGYSIFASGIIVGFSNLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKSI* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3091120 3092467 + Chy4G070640.1 Chy04g00346 224245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00346 177 SUPERFAMILY F1F0 ATP synthase subunit C 99 167 IPR035921 -
Chy04g00346 177 CDD ATP-synt_Vo_c_ATP6F_rpt2 102 166 - -
Chy04g00346 177 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 5 174 - -
Chy04g00346 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 145 168 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy04g00346 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 144 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy04g00346 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 62 86 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy04g00346 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 36 60 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy04g00346 177 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 174 - -
Chy04g00346 177 Gene3D - 18 173 IPR035921 -
Chy04g00346 177 SUPERFAMILY F1F0 ATP synthase subunit C 16 85 IPR035921 -
Chy04g00346 177 CDD ATP-synt_Vo_c_ATP6F_rpt1 20 82 - -
Chy04g00346 177 Pfam ATP synthase subunit C 24 82 IPR002379 GO:0015078|GO:0033177|GO:1902600
Chy04g00346 177 Pfam ATP synthase subunit C 107 166 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00346 Chy-Chr4:3091120 Chy06g00369 Chy-Chr6:2473337 6.49E-09 dispersed
Chy03g01156 Chy-Chr3:14787207 Chy04g00346 Chy-Chr4:3091120 2.83E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00346 K03661 - csv:101205012 330.102