Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g00346 | ATGGCAGCATCTCTAAGCTCTTGGTCCCACGCCCTCGTCAGAATCTCCCCTTACACCTTCTCTGCCGTCGGCATTGCCATTTCCATCGGCGTTTCTGTCCTCGGAGCCGCCTGGGGAATCTACATAACCGGAAGTAGTCTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCCAAGAATTTAATTAGTGTAATTTTCTGTGAAGCTGTGGCTATATATGGTGTCATTGTGGCCATCATTTTACAAACAAAACTGGAGAGTGTTCCAGCATCTCAAATCTATACTCCTGAGTCTCTAACAGCAGGATATTCAATCTTTGCCTCTGGGATTATTGTCGGCTTTTCTAACTTGTTCTGCGGGTTATGTGTAGGGATTATTGGAAGCAGTTGTGCATTGTCTGATGCTCAAAACTCATCTCTTTTTGTAAAGATTCTTGTGATCGAGATCTTTGGAAGCGCACTCGGATTATTTGGTGTAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGCAAAATCAATTTAA | 534 | 43.82 | MAASLSSWSHALVRISPYTFSAVGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYTPESLTAGYSIFASGIIVGFSNLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKSI* | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3091120 | 3092467 | + | Chy4G070640.1 | Chy04g00346 | 224245 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g00346 | 177 | SUPERFAMILY | F1F0 ATP synthase subunit C | 99 | 167 | IPR035921 | - | |
Chy04g00346 | 177 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 102 | 166 | - | - | |
Chy04g00346 | 177 | PANTHER | V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT | 5 | 174 | - | - | |
Chy04g00346 | 177 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 145 | 168 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Chy04g00346 | 177 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 118 | 144 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Chy04g00346 | 177 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 62 | 86 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Chy04g00346 | 177 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 36 | 60 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Chy04g00346 | 177 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 5 | 174 | - | - | |
Chy04g00346 | 177 | Gene3D | - | 18 | 173 | IPR035921 | - | |
Chy04g00346 | 177 | SUPERFAMILY | F1F0 ATP synthase subunit C | 16 | 85 | IPR035921 | - | |
Chy04g00346 | 177 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 20 | 82 | - | - | |
Chy04g00346 | 177 | Pfam | ATP synthase subunit C | 24 | 82 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Chy04g00346 | 177 | Pfam | ATP synthase subunit C | 107 | 166 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g00346 | Chy-Chr4:3091120 | Chy06g00369 | Chy-Chr6:2473337 | 6.49E-09 | dispersed | |
Chy03g01156 | Chy-Chr3:14787207 | Chy04g00346 | Chy-Chr4:3091120 | 2.83E-107 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g00346 | K03661 | - | csv:101205012 | 330.102 |