Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00350 ATGTCGAAGAAGTCGAAGAAGCAGGGAATATTAGGGAAATCAATGTGCGGGGCCGAGCAAGAACGAGAGATCGATCAATTAACGAGAAACGACGGTAGTCATTACAGTCTCGACGGTAGTCATTACAGTCTCACCGGAGGAATCCTGCCGCCGCTAGGCGCCAATGGACAAAGTAATCGAAGATTAAAACTCCGTCGTCGTACAATATCGCCATTCGATTACAATTACAGAGTTTGGGAAACGTTTTTGATATTTCTTGTATTGTACACGGCGTGGGTTTGTCCGTTTGAGTTCGGGTTCATACCTTCGCCAAAGGGAGTTCTTGCTGCAATCGACAATGTAGTGAATGGATTTTTCGCGATTGATATAGTATTGACATTCTTTGTGGCATATTTGGATAAAACAACATACCTGCTGGTGGATGATCGGAAGCTGATAGCACTGAGATATGCGAAATCATGGTTGGTATTGGATGTAGTGTCAATTATCCCATCCGAAGTGGCTCGTGCTATTCTTCCTCCTTCGCTTCAGGCTTATGGATACTTCAATATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTTCCATGTTCGCCAGGTTAGAAAAGGACAGGAACTTCAACTATTTCTTGGTTCGATGCGCTAAGCTTATATTTGTGTGTCTGTTCACGGCTCATTTTGCTGCGTGCTGCTTCTATCTAATAGCTGCAAACTATCCGGACCCAAAAGAGACATGGATAGCCTTGTCTATAGATGACTTTTATACAGCAAGTTTGGGAAGACGTTATGTTACTGCCGTTTACTGGTCAATTACCACAATCACAACCATTGGCTATGGCGATTTGCATCCTGTAAATGAACAAGAAATTACTTTTTGCGTCTTTTACCTCTTCTTTATTCTCGGCTTGCAAGCTTATCTCATCGGAAATATGACTAACTTGATCGTCCATGGCACCAGTCGAACCAGGAAATTCAGGGACACCATCCAAGCATCCTCGAATTTTGCCCATAGAAATCAGCTACCTGTTCGACTTCAAGAACAGATGCTTGCTCATCTGTGTTTGAAATTCAGAACTGATTTAGAGGGTTTACAACAACAAGAGACAGTTGATGCTCTTCCAAAAGCCATCAGATCTAGCATTGCCCTCCATCTCTTCTATTCACTTGTTGATAGAACTTATTTGTTTAATGGAGTATCAACAGACTTGATTTTTCAACTGGTAACTGAAATGAAGGCAGAGTACTTCCCTCCCAAAGAAGATATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATCATTGTCACTGGCGCTGTGGATCTTATTACACAAAGACATGGAATGGAAGAGATCGTGGGTGAAGCAAAAAAGGGAAATGTTGTCGGTGAGATAGGTGTGCTTAGTTATAAACCACAATTGTTTACAGTCCGAACCAGCCGTTTGAGTCAATTGTTGCGTTTGAATCGCACCTCATTTTTTAATTTGGTACAAGCAAGCGTTGGGGATGGGGCAATAATAATGAACAATCTTCTTAAGCACCTGAAGGAGATAAAAGACCCCATGATGGAGGAAATTTTGCAAGAAGTAGAACAGACATTGTCTAGGGCCAAAACAGAAATGCCTCTCAATTTATACCATGCTGCCGACAGTGGTGATGATTTATTGTTGCATCAATTGCTAAAGCGGGGTTTGAATCCAAATGAAGTAGATGCCAGAGACGGGAAGACTGCACTTGTAAACAAATCCCATCTATTATTCTTGCTCATCTTGGCTAACCATAATTAA 1785 41.85 MSKKSKKQGILGKSMCGAEQEREIDQLTRNDGSHYSLDGSHYSLTGGILPPLGANGQSNRRLKLRRRTISPFDYNYRVWETFLIFLVLYTAWVCPFEFGFIPSPKGVLAAIDNVVNGFFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKSWLVLDVVSIIPSEVARAILPPSLQAYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFLVRCAKLIFVCLFTAHFAACCFYLIAANYPDPKETWIALSIDDFYTASLGRRYVTAVYWSITTITTIGYGDLHPVNEQEITFCVFYLFFILGLQAYLIGNMTNLIVHGTSRTRKFRDTIQASSNFAHRNQLPVRLQEQMLAHLCLKFRTDLEGLQQQETVDALPKAIRSSIALHLFYSLVDRTYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIIVTGAVDLITQRHGMEEIVGEAKKGNVVGEIGVLSYKPQLFTVRTSRLSQLLRLNRTSFFNLVQASVGDGAIIMNNLLKHLKEIKDPMMEEILQEVEQTLSRAKTEMPLNLYHAADSGDDLLLHQLLKRGLNPNEVDARDGKTALVNKSHLLFLLILANHN* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3112466 3118127 - Chy4G070680.1 Chy04g00350 224249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00350 594 Pfam Ion transport protein 77 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy04g00350 594 SMART cnmp_10 394 511 IPR000595 -
Chy04g00350 594 ProSiteProfiles cAMP/cGMP binding motif profile. 394 496 IPR000595 -
Chy04g00350 594 Gene3D - 76 315 - -
Chy04g00350 594 PANTHER POTASSIUM CHANNEL AKT1 6 579 IPR045319 GO:0005249|GO:0006813
Chy04g00350 594 SUPERFAMILY Voltage-gated potassium channels 71 315 - -
Chy04g00350 594 SUPERFAMILY cAMP-binding domain-like 319 514 IPR018490 -
Chy04g00350 594 CDD CAP_ED 394 507 IPR000595 -
Chy04g00350 594 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 6 579 - -
Chy04g00350 594 Pfam Cyclic nucleotide-binding domain 414 498 IPR000595 -
Chy04g00350 594 Gene3D Jelly Rolls 361 538 IPR014710 -
Chy04g00350 594 PRINTS EAG/ELK/ERG potassium channel family signature 123 132 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00350 594 PRINTS EAG/ELK/ERG potassium channel family signature 112 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00350 594 PRINTS EAG/ELK/ERG potassium channel family signature 306 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00350 594 PRINTS EAG/ELK/ERG potassium channel family signature 262 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy04g00350 594 PRINTS EAG/ELK/ERG potassium channel family signature 89 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01959 Chy-Chr2:23230745 Chy04g00350 Chy-Chr4:3112466 0 dispersed
Chy04g00327 Chy-Chr4:2913339 Chy04g00350 Chy-Chr4:3112466 2.65E-160 dispersed
Chy04g00350 Chy-Chr4:3112466 Chy06g01131 Chy-Chr6:9811722 2.04E-141 dispersed
Chy04g00350 Chy-Chr4:3112466 Chy11g00817 Chy-Chr11:11708053 7.03E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00350 K21867 - csv:101217334 1129.39