Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00357 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCACTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGCGACACAGTTGGTCTTACGGCCTCTGGTGATGTCTTTGTTGCTTGCAATGAATGTGCATTTCCCGTTTGTCGTCCTTGCTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGTCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGTGTTGATGGTGATGATGACGAGGATGATGTGGATGACATTGAGAACGAGTTTAATTACGTACAAGGAAGTAGCAAGACTAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACGTCTGCGAGACACGAGTCTCAACCTATACCTCTCCTTACAAATGGCCAATCAGTGTCTGGAGAAATTCCTTGTGCTACGCCTGATAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAGTCCCATCCATATGTTGACCCACGGCAGCCAGTTCCCGTGAGAATTGTGGATCCATCAAAGGATTTGAATTCTTATGGGCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGGCAACCTCTGAGCCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTTTTACAGTACCGTTTGACACACCCTGTGAAAGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAGGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTTCCTTGAGAGACTCGCACTAAGATATGATCGTGAAGGAGAGCCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACGGCAAACACTGTGCTTTCCATACTTTCCGTGGACTACCCAGTGGACAAAGTTTCGTGCTATGTATCAGACGATGGTTCGGCAATGCTTACATTTGAAGCGCTCTCTGAAACTGCAGAGTTTGCAAGGAAGTGGGTTCCCTTTTGCAAGAAGCACAACATTGAGCCAAGGGCCCCTGAATTTTATTTTGCTCAAAAAATAGACTACTTGAAGGACAAGATTAAGCCTTCTTTTGTTAAAGAGCGGCGGGCAATGAAGAGAGAGTACGAAGAATTCAAGGTTCGAATCAATGCTCTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGATGGACCATGCAGGATGGAACGGCATGGCCTGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGTCACAGTGGAGGTCTTGATACTGAAGGAAATGAACTGCCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGTTTCCAGCACCACAAGAAAGCCGGAGCAATGAATGCATTGATCCGAGTTTCTGCCGTGCTTACAAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCGTATGGGAAGAAAACATGTTATGTACAATTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATAGTCTTTTTCGACATAAACTTGAAGGGTTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTCTATATGGTTATGATCCTGTACTGACCGAGGCAGATTTGGAACCAAATATTATCATTAAGAGTTGCTGTGGTTCAAGAAAGAAGGGAAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGGACTGAGTCTACCATTCCCATCTTTAATATGGAAGATATCGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAAATGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTCATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGTGGGTGGATTTCAATCTACTGCATGCCTCCGCGGCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTAAATCAGGTGCTTCGATGGGCTTTGGGTTCCATTGAAATCTTGCTTAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGTTAAAGCTTTTGGAGAGAATAGCATATATCAATACCATCGTCTACCCTATCACCTCAATTCCTCTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTTCTGACTGGAAAGTTTATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTTTCCATTTTTGCAACGGGTATTCTTGAACTCAGATGGAGTGGGGTTAGCATTGAAGACTGGTGGAGGAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTCACGTCAAAGGCCAGCGATGAGGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCCACCACTGTCCTTATTATGAATATGGTCGGTATAGTGGCCGGTGTGTCGTATGCCATTAACAGTGGTTACCAATCTTGGGGTCCTCTTTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCAACCATCGTCATTGTCTGGTCCATTCTCCTTGCTTCCATTTTCTCCTTGCTTTGGGTGCGAATCGATCCATTTACCTCGGCCTCGACGAAGGCTGCCAACGGTCAATGTGGTATCAATTGCTAG 3246 45.1 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKTKRQWHGEDAELSTSARHESQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTAWPGNNPRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEMGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC* 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3161093 3167034 + Chy4G070750.1 Chy04g00357 224256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00357 1081 MobiDBLite consensus disorder prediction 118 140 - -
Chy04g00357 1081 Coils Coil 455 475 - -
Chy04g00357 1081 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Chy04g00357 1081 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1081 - -
Chy04g00357 1081 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Chy04g00357 1081 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 649 IPR029044 -
Chy04g00357 1081 SUPERFAMILY RING/U-box 22 111 - -
Chy04g00357 1081 MobiDBLite consensus disorder prediction 162 192 - -
Chy04g00357 1081 MobiDBLite consensus disorder prediction 75 106 - -
Chy04g00357 1081 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Chy04g00357 1081 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 652 IPR029044 -
Chy04g00357 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Chy04g00357 1081 PANTHER CELLULOSE SYNTHASE 19 1081 - -
Chy04g00357 1081 Pfam Cellulose synthase 357 1072 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00248 Chy-Chr3:2363057 Chy04g00357 Chy-Chr4:3161093 0 dispersed
Chy04g00357 Chy-Chr4:3161093 Chy08g00458 Chy-Chr8:11169563 0 dispersed
Chy05g00832 Chy-Chr5:11941814 Chy04g00357 Chy-Chr4:3161093 0 dispersed
Chy11g00639 Chy-Chr11:7651115 Chy04g00357 Chy-Chr4:3161093 1.58E-133 dispersed
Chy11g00640 Chy-Chr11:7669334 Chy04g00357 Chy-Chr4:3161093 2.40E-131 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00357 K10999 - csv:101205724 2213.73