Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00364 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCATTGCTGAAGAGAAGGGTGTGGCTAGGGACATTCGACACGGCGGAGGATGCAGCACGAGCGTACGATCAAGCAGCCATTTTAATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCACTCTGAAGAAGCCAGCCATGGCCATGGTTCTTCTCCAATGTCTCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCCCCTTCCTTAACATGCCTACGGCTCGACTGTGACAACGCTCACATCGGTGTATGGCAGAAGCGTGCAGGCACTCGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGGTACCTTCGCCTGAATCGACAAACCAAGAAGCCGATGTCGATGGCGATGGCGATGGCGATGACCACCAAAACGAAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAACTTCCAGCTAA 585 49.91 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTNQEADVDGDGDGDDHQNEIDEEDRIAMQMIEELLNWNCPLPSTSS* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3212256 3213361 - Chy4G070820.1 Chy04g00364 224263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00364 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Chy04g00364 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Chy04g00364 194 MobiDBLite consensus disorder prediction 153 167 - -
Chy04g00364 194 MobiDBLite consensus disorder prediction 59 84 - -
Chy04g00364 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 192 - -
Chy04g00364 194 MobiDBLite consensus disorder prediction 139 173 - -
Chy04g00364 194 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Chy04g00364 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Chy04g00364 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Chy04g00364 194 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Chy04g00364 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Chy04g00364 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Chy04g00364 194 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00364 Chy-Chr4:3212256 Chy07g01612 Chy-Chr7:20241031 2.86E-60 dispersed
Chy02g02005 Chy-Chr2:23956117 Chy04g00364 Chy-Chr4:3212256 1.14E-73 wgd
Chy04g00364 Chy-Chr4:3212256 Chy05g01314 Chy-Chr5:17323731 9.40E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17809 PF00847 AP2 4.00E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00364 - - csv:101206916 380.948